BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28930.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802 784 0.0
Ahg936692 jgi|Araly1|936692|scaffold_500883.1 745 0.0
Ahg903878 jgi|Araly1|903878|Al_scaffold_0003_1006 350 1e-95
Ahg947153 jgi|Araly1|947153|scaffold_703382.1 263 2e-69
Ahg930274 jgi|Araly1|930274|scaffold_302731.1 263 2e-69
Ahg936693 jgi|Araly1|936693|scaffold_500884.1 145 6e-34
Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1 111 6e-24
Ahg887906 jgi|Araly1|887906|Al_scaffold_0166_2 104 1e-21
> Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802
Length=510
Score = 784 bits (424), Expect = 0.0
Identities = 484/513 (94%), Gaps = 3/513 (1%)
Strand=Plus/Plus
Query 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGACTAGCTCCGATCAATCTCCATCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
Query 141 CCAGCCGTTGTTAATTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCCAC 200
|||||||| || || || || |||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CCAGCCGTCGTCAAATTGATCCTCGAATGTGTTCCGGTCATGGTTTCCGCTCAACTCCAC 120
Query 201 GGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACAAT 260
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 121 GGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATCTCTCCTTCTGAGAAT 180
Query 261 GGATTAATCAATGGCAAGATACTAACTGGATTAACAGATTCTCAGTTAGAGAGTTTAGAT 320
||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GGACTCATCAACGGCAAGATACTAAGTGGATTAACAGATTCTCAGTTAGAGAGTTTAGAT 240
Query 321 ATGATTGAAGGAACTGAATATGTGAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTG 380
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGATTGAAGGAACTGAATATGTCAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTG 300
Query 381 GAGAAGAAGCAAGTTGAAACAATTGTATGGGCAAACAAGGATGATCCTAATATGTATGGA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAAGAAGCAAGTTGAAACAATTGTATGGGCAAACAAGGATGATCCTAATATGTATGGA 360
Query 441 GAATGGGATTTCGAGGAATGGAAGAGGCTTCATATGGAGAAATTTATAGAGGCGGCGACG 500
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 361 GAATGGGATTTCGAGGAATGGAAGAGGCTTCATATGGAGAAATTCATAGAGGCGTCGACG 420
Query 501 AAATTCATGGAGTGGAAGAAGAATCCGAATGGGAGAAGTAGGGAAGAGTTTGAGAAGTTT 560
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 AAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGAAGTAGGGAAGAGTTTGAGAAGTTT 480
Query 561 GTACAAGATGATTCTTCTCCGGCTTCGGCTTGA 593
||| |||||| || | ||| || |||| |||
Sbjct 481 GTATTCGATGATCCT-C-CCG-CTGCGGCGTGA 510
> Ahg936692 jgi|Araly1|936692|scaffold_500883.1
Length=552
Score = 745 bits (403), Expect = 0.0
Identities = 509/559 (91%), Gaps = 12/559 (2%)
Strand=Plus/Plus
Query 61 TCACAGTGAAAAT-AAAAACAATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTC 119
|||||||| |||| |||||| ||||| |||||| |||||||||| |||||||| ||||||
Sbjct 1 TCACAGTG-AAATCAAAAACGATGACTAGCTCCAATCAATCTCCGTCGCACGATGTCTTC 59
Query 120 GTCTACGGCAGTTTCCAAGAACCAGCCGTTGTTAATTTAATTCTCGAATGTGCTCCGGTC 179
||||||||||||||||||||||||||||| |||||| | || ||||||||| ||||||||
Sbjct 60 GTCTACGGCAGTTTCCAAGAACCAGCCGTCGTTAATCTGATCCTCGAATGTTCTCCGGTC 119
Query 180 ATGGTTTCCGCTCAACTCCACGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCA 239
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 120 ATGGTTTCCGCTCAACTCCACGGCTATCACGTATATAGACTCAAAGGTCGTTTGCATGCT 179
Query 240 TGTATTTCTCCTTCCGACAATGGA-TTAATCAATGGCAAGATACTAACTGGATTAACAGA 298
||||| |||||||| || |||||| || ||||| ||||||||||||| ||||||||||||
Sbjct 180 TGTATCTCTCCTTCTGAGAATGGACTT-ATCAACGGCAAGATACTAAGTGGATTAACAGA 238
Query 299 TTCTCAGTTAGAGAGTTTAGATATGATTGAAGGAACTGAATATGTGAGGAAGACTGTTGA 358
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 TTCTCAGTTAGAGAATTTAGATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGA 298
Query 359 AGTTGTTTTGACTGATACTT-TGGAGAAGAAGCAAGTTGAAACA-ATTGTATGGGCAAAC 416
|||||||||||||||||||| || ||||||||||||||||||| || |||||||||||
Sbjct 299 AGTTGTTTTGACTGATACTTCTG-AGAAGAAGCAAGTTGAAACCTATA-TATGGGCAAAC 356
Query 417 AAGGATGATCCTAATATGTATGGAGAATGGGATTTCGAGGAATGGAAGAGGCTTCATATG 476
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 AAGGATGATCCTAATTTGTATGGAGAATGGGATTTTGAGGAATGGAAGAGGCTTCATATG 416
Query 477 GAGAAATTTATAGAGGCGGCGACGAAATTCATGGAGTGGAAGAAGAATCCGAATGGGAGA 536
|||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 417 GAGAAATTCATAGAGGCGTCGACGAAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGA 476
Query 537 AGTAGGGAAGAGTTTGAGAAGTTTGTACAAGATGATTCTTCTCCGGCTTCGGCTTGAAGA 596
||||||||||||||||||||||||||| |||||| || | ||| || ||| ||||||
Sbjct 477 AGTAGGGAAGAGTTTGAGAAGTTTGTATTCGATGATCCT-C-CCG-CTGAGGCATGAAGA 533
Query 597 AGTTGTTTGCGTTTTATCT 615
|||||| ||||||| ||||
Sbjct 534 AGTTGTCTGCGTTT-ATCT 551
> Ahg903878 jgi|Araly1|903878|Al_scaffold_0003_1006
Length=261
Score = 350 bits (189), Expect = 1e-95
Identities = 230/250 (92%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
Query 141 CCAGCCGTTGTTAA-TTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCCA 199
|||||||| || || ||| ||||| |||||| |||||||||| || ||||||||||||||
Sbjct 61 CCAGCCGTCGT-AAGTTTGATTCTTGAATGTTCTCCGGTCATCGTCTCCGCTCAACTCCA 119
Query 200 CGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACAA 259
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 120 CGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGAA 179
Query 260 TGGATTAATCAATGGCAAGATACTAACTGGATTAACAGATTCTCAGTTAGAGAGTTTAGA 319
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 180 TGGAGTAATCAACGGCAAGATACTAACTGGATTAACAGATGCTCAGTTAGAGAATTTAGA 239
Query 320 TATGATTGAA 329
||||||||||
Sbjct 240 TATGATTGAA 249
> Ahg947153 jgi|Araly1|947153|scaffold_703382.1
Length=313
Score = 263 bits (142), Expect = 2e-69
Identities = 181/200 (91%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 80 AATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGA 139
|||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 20 AATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGA 79
Query 140 ACCAGCCGTTGTTAA-TTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCC 198
||||||||| || || ||| ||||| |||||| |||||||||| || || ||||||||||
Sbjct 80 ACCAGCCGTCGT-AAGTTTGATTCTTGAATGTTCTCCGGTCATCGTCTCTGCTCAACTCC 138
Query 199 ACGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACA 258
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
Sbjct 139 ACGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGA 198
Query 259 ATGGATTAATCAATGGCAAG 278
||||| ||||||| ||||||
Sbjct 199 ATGGAGTAATCAAAGGCAAG 218
> Ahg930274 jgi|Araly1|930274|scaffold_302731.1
Length=1366
Score = 263 bits (142), Expect = 2e-69
Identities = 181/200 (91%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 21 ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCAAAGAA 80
Query 141 CCAGCCGTTGTTAA-TTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCCA 199
|||||||| | ||| ||| ||||| |||||| |||||||||| || ||||||||||||||
Sbjct 81 CCAGCCGTCG-TAAGTTTGATTCTTGAATGTTCTCCGGTCATCGTCTCCGCTCAACTCCA 139
Query 200 CGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACAA 259
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 140 CGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGAA 199
Query 260 TGGATTAATCAATGGCAAGA 279
|||| ||||||| |||||||
Sbjct 200 TGGAGTAATCAACGGCAAGA 219
> Ahg936693 jgi|Araly1|936693|scaffold_500884.1
Length=542
Score = 145 bits (78), Expect = 6e-34
Identities = 212/275 (77%), Gaps = 16/275 (6%)
Strand=Plus/Plus
Query 268 TCAATGGCAAGATACTAACTGGATTAACAGATTCTCAGTTAGAGAGTTTAGATATGATTG 327
|||| || ||| || |||||||| | | ||| || ||||| | | ||| ||| ||||||
Sbjct 205 TCAACGGAAAGGTAATAACTGGAGTGTCGGATGCTGAGTTAAATAATTTCGATGTGATTG 264
Query 328 AAGG-AACTGAATATGTGAG-GAAGACTGTTGAAGTTGTTTTGACT-GATACTT-TGGAG 383
|||| || ||| |||| ||| | | || |||||||||| | || | |||| || | |||
Sbjct 265 AAGGTAA-TGATTATGAGAGAGTA-ACAGTTGAAGTTG-TAAGAATGGATAATTCT-GAG 320
Query 384 AAGAAGCAAGTTGAAACAAT-TGTATGGGCAAACAAGGATGATCCTA-ATATGTATGGAG 441
|||| | |||||||||| | ||| |||| || || |||||||||| | ||||||||||
Sbjct 321 AAGATGAAAGTTGAAAC-TTATGTTTGGGTTAATAAAGATGATCCTAGA-ATGTATGGAG 378
Query 442 AATGGGATTTCGAGGAATGGAAGAG-GCTTCATATGGAGAAATTTATAGAGGCGGCGACG 500
||||||||||||||||||||| ||| | |||| ||||||||| ||||| | | |
Sbjct 379 AATGGGATTTCGAGGAATGGA-GAGTGATTCACGCGGAGAAATTCGTAGAGACATTTA-G 436
Query 501 AAA-TTCATGGAGTGGAAGAAGAATCCGAATGGGA 534
||| || |||| ||||| |||||||| |||||||
Sbjct 437 AAAGTTGTTGGAATGGAACAAGAATCCAAATGGGA 471
> Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1
Length=690
Score = 111 bits (60), Expect = 6e-24
Identities = 108/131 (82%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 335 TGAATATGTGAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTGGAGAAGAAGCAAGT 394
|||||||| || ||| |||||||||| || |||| ||||||| |||||| ||||||
Sbjct 249 TGAATATGACAGAAAGGCTGTTGAAGTGGTGCTGACGGATACTTCAGAGAAGCTGCAAGT 308
Query 395 TGAAACAAT-TGTATGGGCA-AACAAGGATGATCCTAATATGTATGGAGAATGGGATTTC 452
||||| || ||||| || | ||||| |||||||| || | ||||||||||||||||||
Sbjct 309 CGAAAC-ATATGTAT-GGAAGAACAAAGATGATCCGGATCTTTATGGAGAATGGGATTTC 366
Query 453 GAGGAATGGAA 463
|||||||||||
Sbjct 367 GAGGAATGGAA 377
> Ahg887906 jgi|Araly1|887906|Al_scaffold_0166_2
Length=204
Score = 104 bits (56), Expect = 1e-21
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
Query 141 CCAGCCGT 148
||||||||
Sbjct 61 CCAGCCGT 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5