BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28940.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936692 jgi|Araly1|936692|scaffold_500883.1 832 0.0
Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802 721 0.0
Ahg903878 jgi|Araly1|903878|Al_scaffold_0003_1006 322 3e-87
Ahg887906 jgi|Araly1|887906|Al_scaffold_0166_2 169 4e-41
> Ahg936692 jgi|Araly1|936692|scaffold_500883.1
Length=552
Score = 832 bits (450), Expect = 0.0
Identities = 511/541 (94%), Gaps = 2/541 (0%)
Strand=Plus/Plus
Query 57 TCACAGTGAACTCAAAAACAATGACAAGCTCCGATAAATCTCTGTCGCACGACGTTTTCG 116
|||||||||| |||||||| ||||| |||||| || |||||| ||||||||| || ||||
Sbjct 1 TCACAGTGAAATCAAAAACGATGACTAGCTCCAATCAATCTCCGTCGCACGATGTCTTCG 60
Query 117 TCTACGGCAGTTTCCAAGAACCATCCGTCGTCAATCTGATCCTCGAATGTTCTCCGGTCA 176
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCTACGGCAGTTTCCAAGAACCAGCCGTCGTTAATCTGATCCTCGAATGTTCTCCGGTCA 120
Query 177 TGGTTCCCGCTCAACTCCACGGCTATCACGTATATAGACTCAAAGGTCGCTTACATGCAT 236
||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 121 TGGTTTCCGCTCAACTCCACGGCTATCACGTATATAGACTCAAAGGTCGTTTGCATGCTT 180
Query 237 GTATCTCTCCTTCTGAGAATGGACTAATCAACGGCAAGATACTAACTGGGTTAACAGATT 296
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct 181 GTATCTCTCCTTCTGAGAATGGACTTATCAACGGCAAGATACTAAGTGGATTAACAGATT 240
Query 297 CTCAGTTAGAGAATTTAGATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGAAG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCAGTTAGAGAATTTAGATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGAAG 300
Query 357 TTGTTTTGACTGATACTTCGGAGAAGAAGCAAGTTGAGACCTATGTATGGGCAAACAAGG 416
||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 301 TTGTTTTGACTGATACTTCTGAGAAGAAGCAAGTTGAAACCTATATATGGGCAAACAAGG 360
Query 417 ATGATCCTAATTTGTATGGAGAATGGGATTTTGAGGAATGG-AGACGGCTTCACATGGAT 475
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 361 ATGATCCTAATTTGTATGGAGAATGGGATTTTGAGGAATGGAAGA-GGCTTCATATGGAG 419
Query 476 AAATTCATCGAGGCGTCGACGAAATTCATCGAGTGGAAGAAGAATCCGGATGGGAGAAGT 535
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 420 AAATTCATAGAGGCGTCGACGAAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGAAGT 479
Query 536 AGGGAAGAGTTTGAGAAGTTTGTATTCGATGATCCTCCCACTGCGGCTTGAAGAAGTTGT 595
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 480 AGGGAAGAGTTTGAGAAGTTTGTATTCGATGATCCTCCCGCTGAGGCATGAAGAAGTTGT 539
Query 596 C 596
|
Sbjct 540 C 540
> Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802
Length=510
Score = 721 bits (390), Expect = 0.0
Identities = 474/514 (92%), Gaps = 8/514 (2%)
Strand=Plus/Plus
Query 77 ATGACAAGCTCCGATAAATCTCTGTCGCACGACGTTTTCGTCTACGGCAGTTTCCAAGAA 136
||||| ||||||||| |||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 1 ATGACTAGCTCCGATCAATCTCCATCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
Query 137 CCATCCGTCGTC-AATCTGATCCTCGAATGT-TCTCCGGTCATGGTTCCCGCTCAACTCC 194
||| |||||||| ||| |||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 61 CCAGCCGTCGTCAAAT-TGATCCTCGAATGTGT-TCCGGTCATGGTTTCCGCTCAACTCC 118
Query 195 ACGGCTATCACGTATATAGACTCAAAGGTCGCTTACATGCATGTATCTCTCCTTCTGAGA 254
||||||||||| | |||||||| |||||||| || ||| |||||||||||||||||||||
Sbjct 119 ACGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATCTCTCCTTCTGAGA 178
Query 255 ATGGACTAATCAACGGCAAGATACTAACTGGGTTAACAGATTCTCAGTTAGAGAATTTAG 314
||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 179 ATGGACTCATCAACGGCAAGATACTAAGTGGATTAACAGATTCTCAGTTAGAGAGTTTAG 238
Query 315 ATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGAAGTTGTTTTGACTGATACTT 374
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 ATATGATTGAAGGAACTGAATATGTCAGGAAGACTGTTGAAGTTGTTTTGACTGATACTT 298
Query 375 CGGAGAAGAAGCAAGTTGAGACCTA-TGTATGGGCAAACAAGGATGATCCTAATTTGTAT 433
|||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||
Sbjct 299 TGGAGAAGAAGCAAGTTGA-AACAATTGTATGGGCAAACAAGGATGATCCTAATATGTAT 357
Query 434 GGAGAATGGGATTTTGAGGAATGG-AGACGGCTTCACATGGATAAATTCATCGAGGCGTC 492
|||||||||||||| ||||||||| ||| ||||||| ||||| |||||||| ||||||||
Sbjct 358 GGAGAATGGGATTTCGAGGAATGGAAGA-GGCTTCATATGGAGAAATTCATAGAGGCGTC 416
Query 493 GACGAAATTCATCGAGTGGAAGAAGAATCCGGATGGGAGAAGTAGGGAAGAGTTTGAGAA 552
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GACGAAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGAAGTAGGGAAGAGTTTGAGAA 476
Query 553 GTTTGTATTCGATGATCCTCCCACTGCGGCTTGA 586
|||||||||||||||||||||| ||||||| |||
Sbjct 477 GTTTGTATTCGATGATCCTCCCGCTGCGGCGTGA 510
> Ahg903878 jgi|Araly1|903878|Al_scaffold_0003_1006
Length=261
Score = 322 bits (174), Expect = 3e-87
Identities = 226/251 (90%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 77 ATGACAAGCTCCGATAAATCTCTGTCGCACGACGTTTTCGTCTACGGCAGTTTCCAAGAA 136
||||| ||||| ||| |||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 1 ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
Query 137 CCATCCGTCGTCAA-TCTGATCCTCGAATGTTCTCCGGTCATGGTTC-CCGCTCAACTCC 194
||| ||||||| || | |||| || ||||||||||||||||| | || ||||||||||||
Sbjct 61 CCAGCCGTCGT-AAGTTTGATTCTTGAATGTTCTCCGGTCATCG-TCTCCGCTCAACTCC 118
Query 195 ACGGCTATCACGTATATAGACTCAAAGGTCGCTTACATGCATGTATCTCTCCTTCTGAGA 254
||||||||||| | |||||||||||||| || || ||| ||||||| |||||||||||||
Sbjct 119 ACGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGA 178
Query 255 ATGGACTAATCAACGGCAAGATACTAACTGGGTTAACAGATTCTCAGTTAGAGAATTTAG 314
||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 179 ATGGAGTAATCAACGGCAAGATACTAACTGGATTAACAGATGCTCAGTTAGAGAATTTAG 238
Query 315 ATATGATTGAA 325
|||||||||||
Sbjct 239 ATATGATTGAA 249
> Ahg887906 jgi|Araly1|887906|Al_scaffold_0166_2
Length=204
Score = 169 bits (91), Expect = 4e-41
Identities = 107/115 (93%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 211 TAGACTCAAAGGTCGCTTACATGCATGTATCTCTCCTTCTGAGAATGGACTAATCAACGG 270
|||||||||||| || || ||| ||||||| |||||||||||||||||| ||||||||||
Sbjct 78 TAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGAATGGAGTAATCAACGG 137
Query 271 CAAGATACTAACTGGGTTAACAGATTCTCAGTTAGAGAATTTAGATATGATTGAA 325
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 138 CAAGATACTAACTGGATTAACAGATGCTCAGTTAGAGAATTTAGATATGATTGAA 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5