BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28945.1

Length=5675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896827 jgi|Araly1|896827|Al_scaffold_0005_793                     108    6e-22


> Ahg896827 jgi|Araly1|896827|Al_scaffold_0005_793
Length=666

 Score =  108 bits (58),  Expect = 6e-22
 Identities = 62/64 (97%), Gaps = 0/64 (0%)
 Strand=Plus/Plus

Query  1447  GGAGGAGGCAAAAGAAAAGCTACTGATGAGGCTGAAGTTCCATCCAAAGTTGCAAAGTGC  1506
             |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  196   GGAGGAAGCAAAAGAAAAGCTACTGATGAGGGTGAAGTTCCATCCAAAGTTGCAAAGTGC  255

Query  1507  AACA  1510
             ||||
Sbjct  256   AACA  259



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 214949172304


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5