BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28950.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936693 jgi|Araly1|936693|scaffold_500884.1 808 0.0
Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802 137 1e-31
Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1 84.2 1e-15
> Ahg936693 jgi|Araly1|936693|scaffold_500884.1
Length=542
Score = 808 bits (437), Expect = 0.0
Identities = 501/532 (94%), Gaps = 4/532 (1%)
Strand=Plus/Plus
Query 115 AGAAAAAGATGACCAGCTCTGATCC-TCAATCTCACAACGTCTTCGTCTACGGTAGCATT 173
|||| |||||||| ||||||||||| || |||||||||| ||||||||||||| ||||||
Sbjct 13 AGAAGAAGATGACTAGCTCTGATCCTTC-ATCTCACAACATCTTCGTCTACGGCAGCATT 71
Query 174 CTAGAACCCGCCGTCGCCGCCGTGATCCTGGATCGCACAGCCGATACAGTCCCCGCCGTT 233
||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 72 CTAGAGCCTGCCGTAGCCGCCGTGATCCTTGATCGCACCGCCGACACAGTCCCCGCCGTT 131
Query 234 CTCCATGGCTATCACAGATATAAACTCAAAGGACTTCCATATCCATGTATTGTTTCTTCT 293
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 132 CTTCATAGCTATCACAGATATAAACTCAAAGGACTTCCATATCCATGTATTGTTCCGTCT 191
Query 294 GATTCTGGAAAAGTCAACGGAAAGGTTATAACTGGAGTGTCTGATGCTGAGTTAAATAAT 353
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 192 GAATCAGGAAAAGTCAACGGAAAGGTAATAACTGGAGTGTCGGATGCTGAGTTAAATAAT 251
Query 354 TTCGATGTGATTGAAGGTAATGATTATGAGAGAGTAACTGTTGAAGTTGTAAGAATGGAT 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 252 TTCGATGTGATTGAAGGTAATGATTATGAGAGAGTAACAGTTGAAGTTGTAAGAATGGAT 311
Query 414 AATTCTGAGAAGGTGAAAGTTGAAACTTATGTTTGGGTTAATAAAGATGATCCTAGAATG 473
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AATTCTGAGAAGATGAAAGTTGAAACTTATGTTTGGGTTAATAAAGATGATCCTAGAATG 371
Query 474 TATGGAGAATGGGATTTCGAGGAATGGAGAGTGGTTCACGCGGAGAAATTCGTGGAGACT 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 372 TATGGAGAATGGGATTTCGAGGAATGGAGAGTGATTCACGCGGAGAAATTCGTAGAGACA 431
Query 534 TTTAGAAAAATGTTGGAATGGAACAAGAATCCAAATGGGAAGAGCATGGAGGAGGCTGTA 593
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTTAGAAAGTTGTTGGAATGGAACAAGAATCCAAATGGGAAGAGCATGGAGGAGGCTGTA 491
Query 594 GGATCATTATTATCGTCAGG-GGATTAATTCTTGATGAGCTTGGCTAATCTT 644
||| ||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 492 GGACCATTATTATCGTC-GGAGGATTGATTCTTGATGAGCTTGGCTAATCTT 542
> Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802
Length=510
Score = 137 bits (74), Expect = 1e-31
Identities = 347/473 (73%), Gaps = 41/473 (9%)
Strand=Plus/Plus
Query 123 ATGACCAGCTCTGATC---CTCAATCTCACAACGTCTTCGTCTACGGTAGCATT-CTAGA 178
||||| ||||| |||| ||| ||| |||||||||||||||||||| || || | |||
Sbjct 1 ATGACTAGCTCCGATCAATCTCCATCGCACAACGTCTTCGTCTACGGCAG-TTTCCAAGA 59
Query 179 ACCCGCCGTCGCCGCCGTGATCCT-GGATCGCACAGCCGATACA--GTCCCCGC-CGTTC 234
||| ||||||| | ||||||| | || | ||| | || || |||| | |
Sbjct 60 ACCAGCCGTCGTCAAATTGATCCTCGAAT-G-TGTTCCGGT-CATGGTTTCCGCTC-AAC 115
Query 235 TCCATGGCTATCAC-AGATATAAACTCAAAGGAC--TTCCATATCCATGTATTGT-TTCT 290
|||| ||||||||| | |||| ||| ||||| | || | ||||||||| | | | ||
Sbjct 116 TCCACGGCTATCACTTG-TATAGACTTAAAGGTCGTTTGC--ATCCATGTA-TCTCTCCT 171
Query 291 TCTGATTCTGGA-AAAGTCAACGGAAAGGTTA-TAACTGGAGTGTCTGATGCTGAGTTAA 348
||||| |||| | ||||||| || | || ||| |||| | | ||| || |||||
Sbjct 172 TCTGAGAATGGACTCA-TCAACGGCAA-GATACTAAGTGGATTAACAGATTCTCAGTTAG 229
Query 349 ATAATTTCGATGTGATTGAAGGTAA-TGATTATGAGAGAGTA-ACTGTTGAAGTTG-TAA 405
| | ||| ||| |||||||||| || ||| |||| || | | ||||||||||||| |
Sbjct 230 AGAGTTTAGATATGATTGAAGG-AACTGAATATGTCAG-GAAGACTGTTGAAGTTGTTTT 287
Query 406 GAATGGATAATTCT-GAGAAGGTGAAAGTTGAAACTTA-TGTTTGGGTTAATAAAGATGA 463
|| | |||| || | |||||| | |||||||||| | ||| |||| || || |||||
Sbjct 288 GACT-GATACTT-TGGAGAAGAAGCAAGTTGAAAC-AATTGTATGGGCAAACAAGGATGA 344
Query 464 TCCTAGA-ATGTATGGAGAATGGGATTTCGAGGAATGGAGAGTGG-TTCACGCGGAGAAA 521
||||| | ||||||||||||||||||||||||||||||| || || |||| |||||||
Sbjct 345 TCCTA-ATATGTATGGAGAATGGGATTTCGAGGAATGGA-AGAGGCTTCATATGGAGAAA 402
Query 522 TTCGTGGAGACTTTTA-GAAAAATGTTGGAATGGAACAAGAATCCAAATGGGA 573
||| | ||| | | | ||| | |||| ||||| |||||||| ||||||
Sbjct 403 TTCATAGAGGCGTCGACGAAGT-TCATGGAGTGGAAGAAGAATCCGGATGGGA 454
> Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1
Length=690
Score = 84.2 bits (45), Expect = 1e-15
Identities = 91/113 (81%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 391 CTGTTGAAGTTGT-AAGAATGGATAATTCTGAGAAGGTGAAAGTTGAAACTTATGTTTGG 449
|||||||||| || | | ||||| ||| |||||| || |||| ||||| ||||| |||
Sbjct 266 CTGTTGAAGTGGTGCTG-ACGGATACTTCAGAGAAGCTGCAAGTCGAAACATATGTATGG 324
Query 450 GTTAATAAAGATGATCCTAGA-ATGTATGGAGAATGGGATTTCGAGGAATGGA 501
|| ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 325 AAGAACAAAGATGATCC-GGATCTTTATGGAGAATGGGATTTCGAGGAATGGA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5