BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28956.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496480 jgi|Araly1|496480|fgenesh2_kg.8__2296__AT3G28956.1 608 1e-173
Ahg906638 jgi|Araly1|906638|Al_scaffold_0003_3766 599 9e-171
> Ahg496480 jgi|Araly1|496480|fgenesh2_kg.8__2296__AT3G28956.1
Length=477
Score = 608 bits (329), Expect = 1e-173
Identities = 405/441 (92%), Gaps = 7/441 (2%)
Strand=Plus/Plus
Query 137 GAAAAAGCTTCTTTTTGAATGAAGGCAAATGCAGGAGCACTTACCAATTTCG-AGTTGCT 195
||||||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||
Sbjct 42 GAAAAAGCTTCTTTTTGTATGAAGGCAAACGCAGGAGCACTTACCAATTTCGAAG-TGCT 100
Query 196 TGACTTCTTAAACTCAAGAGGTGCTTCAAAAGATACTACAAGAGTTATTGCTCCAATTGC 255
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 101 TGACTTCTTAAACTCAAGGGGTGCATCAAAAGATACTACAAGAGTTATTGCTCCAATTGC 160
Query 256 TAGATCAGAATACAAGGTCTATGATTATTTGGTGGAGACTGCTGCTTCCACTCAAACACG 315
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 161 TAGATCAGAATACAAGGTCTATGATTATTTGGTGGAGACTGCTGCTTCTACTCAAACACG 220
Query 316 AGAGAGCGTTAACAAATCCGCAGACAAGTGTAAAGATTTCAAACTCGCTAAAGCTGAGAT 375
||||||||||| ||||| |||||||||||| |||||||||||| |||| |||||||||||
Sbjct 221 AGAGAGCGTTACCAAATTCGCAGACAAGTGCAAAGATTTCAAAGTCGCCAAAGCTGAGAT 280
Query 376 TCTCAATATCATCAATCTCTGGCCTTCTTCTATAGTCGAACTGTTACCGATCATAGAGA- 434
||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 281 TCTCAATATCATCAATCTCCGGCCTTCTTCTATTGTCGAATTGTTACCGATCATAGAGAC 340
Query 435 ACCTTGATGATCGAGAAATCGACACAGATGGGATATTAGAGCTTGTGAAGGATTTGCTAC 494
||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 341 ACCG-GATGATCGAAAAATCAACACAGATGGGATATTAGAGCTTGTGAAGGATTTGTTAC 399
Query 495 CTCCTCTGCCTACAGCTGAAAGTCCTAAAGATAATGATGAAGAAGAAGAAACAGAGAATG 554
| |||||||| ||| |||||| | | ||||||||| ||||||||| | |||| || |
Sbjct 400 CGCCTCTGCCAACAACTGAAACACATGAAGATAATGCCGAAGAAGAA-A--CAGACAACG 456
Query 555 GTGAACAGTCGTGACTTGCAA 575
||||||||| |||||||||||
Sbjct 457 GTGAACAGTTGTGACTTGCAA 477
> Ahg906638 jgi|Araly1|906638|Al_scaffold_0003_3766
Length=486
Score = 599 bits (324), Expect = 9e-171
Identities = 386/415 (93%), Gaps = 7/415 (2%)
Strand=Plus/Plus
Query 156 TGAAGGCAAATGCAGGAGCACTTACCAATTTCG-AGTTGCTTGACTTCTTAAACTCAAGA 214
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 77 TGAAGGCAAATGCAGGAGCACTTACCAATTTCGAAG-TGCTTGACTTCTTAAACTCAAGA 135
Query 215 GGTGCTTCAAAAGATACTACAAGAGTTATTGCTCCAATTGCTAGATCAGAATACAAGGTC 274
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GGTGCATCAAAAGATACTACAAGAGTTATTGCTCCAATTGCTAGATCAGAATACAAGGTT 195
Query 275 TATGATTATTTGGTGGAGACTGCTGCTTCCACTCAAACACGAGAGAGCGTTAACAAATCC 334
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 196 TATGATTATTTGGTGGAGACTGCTGCTTCCACTCAAACACGAGAGAGCGTTACCAAATTC 255
Query 335 GCAGACAAGTGTAAAGATTTCAAACTCGCTAAAGCTGAGATTCTCAATATCATCAATCTC 394
||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 256 GCAGACAAGTGCAAAGATTTCAAAGTCGCCAAAGCTGAGATTCTCAATATCATCAATCTC 315
Query 395 TGGCCTTCTTCTATAGTCGAACTGTTACCGATCATAGAGA-ACCTTGATGATCGAGAAAT 453
||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 316 CGGCCTTCCTCTATTGTCGAACTGTTACCGATCATAGAGACACC-GGATGATCGAGAAAT 374
Query 454 CGACACAGATGGGATATTAGAGCTTGTGAAGGATTTGCTACCTCCTCTGCCTACAGCTGA 513
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct 375 CGACACAGATGGGATATTAGAGCTTGTGAAGGATTTGCTACCGCTTCTGCCAACAACTGA 434
Query 514 AAGTCCTAAAGATAATGATGAAGAAGAAGAAACAGAGAATGGTGAACAGTCGTGA 568
|| || |||||||||||| || | |||||||| || || | |||||||||||||
Sbjct 435 AACTCATAAAGATAATGAC-AA-A-GAAGAAACTGACAACGTTGAACAGTCGTGA 486
Score = 56.5 bits (30), Expect = 2e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 53 TTTCAGGAGCAAAAACTCTGATTTTGGAGTATC 85
||||||||||||||||||||||||||||| |||
Sbjct 42 TTTCAGGAGCAAAAACTCTGATTTTGGAGCATC 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5