BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28960.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347270 jgi|Araly1|347270|fgenesh1_pg.C_scaffold_5000662 1873 0.0
> Ahg347270 jgi|Araly1|347270|fgenesh1_pg.C_scaffold_5000662
Length=1218
Score = 1873 bits (1014), Expect = 0.0
Identities = 1151/1219 (94%), Gaps = 2/1219 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGATAACCAAGAAATACAACGTGACAATGTCGGATCTTCATCTTTCTTTAAA 60
||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||
Sbjct 1 ATGGAGGAAGATAACCAAGAAAGACAACGTGACAATGTTGGAACTTCATCTTTCTTCAAG 60
Query 61 ACATGTTTCAACGCACTCAATGCTCTTTCAGGAATTGGAATATTATCGGTACCATATTCA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACTTGTTTCAACGCACTCAATGCTCTTTCAGGAATTGGAATATTATCGGTACCATACTCA 120
Query 121 CTTGCTCGTGGAGGATGGTTGAGTCTTTCACTTTTGTTACTCCTAGCCGTAACCGCCTTC 180
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 121 CTTGCTCGTGGAGGATGGTTGAGTCTTTCACTTCTGTTACTCCTAGCCGCAACCGCCTTC 180
Query 181 TACACATCCTTACTCATTACAAAATGTATGAATGCGGACCGCAACATCAAAACATATCCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACACATCCTTACTCATTACAAAATGTATGAATGCGGACCGCAACATCAAAACATATCCC 240
Query 241 GACATAGGAGAACGCGCATTTGGTAGACCGGGAAGAATCATTGTGTCAGTCTTCATGCAC 300
||||| |||||| | |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 241 GACATTGGAGAAAGAGCATTTGGTAGACCAGGAAGAATCATTGTGTCACTCTTCATGCAC 300
Query 301 CTAGAGCTCTATCTAGTCACCACGGGTTTCTTGATCCTCGAGGGCGACAATCTTCACAAT 360
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 CTAGAACTCTATCTAGTCACCACAGGTTTCTTGATCCTCGAGGGGGACAATCTTCACAAT 360
Query 361 CTTTTCCCGGGTTTTACCATCGAAATGATCGGATTGAGATTGAATGGCAAACAAGCTTTC 420
|||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||
Sbjct 361 CTTTTCCCGGGTTTTAACATCGAACTAATTGGATTGAGATTGAATGGCAAACAAGCTTTC 420
Query 421 ATGGCGACCGTCGCCTTTGTCATTATGCCAACTCTATGGTGGGATAATCTCAGCGTCTTG 480
|||||||| || ||| | ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 421 ATGGCGACTGTTGCCCTCGTCATCATGCCAACTCTATGGTGGGATAATCTAAGCGTTTTG 480
Query 481 TCGTATGTTTCTATGAGTGGCGTTTTAGCTACGACTGTGACGCTTGGATCAATATCTTGG 540
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TCTTATGTTTCTATGAGTGGCGTTTTAGCTACGACTGTGACTCTTGGATCAATATCTTGG 540
Query 541 ATTGGCGCATTTGATGGGATTGGGTTTCATCAAAAAGGAAAGTTGATAAATTGGAGTGGG 600
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GTTGGCGCATTCGATGGAATTGGGTTTCATCAAAAGGGAAAGTTGATAAATTGGAGTGGG 600
Query 601 ATCCCTACTGCTTTGAGCTTATATGCTTTTTGCTATGGTGCGCATCCAGTTTTGCCCACT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCCCTACAGCTTTGAGCTTATATGCTTTTTGCTATGGTGCGCATCCAGTTTTGCCCACT 660
Query 661 TTGTATTCTTCTATGAAAAGCAAACATCAGTTCAACAATGTCCTACTAATATGTTTTATA 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TTGTATTCCTCTATGAAAAGCAAACATCAGTTCAACAATGTTCTACTAATATGTTTTATA 720
Query 721 TTATGCACCATAGGATACACATCAATGGCAGTTTTGGGCTACTTAATGTATGGATCACAA 780
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 721 CTATGCACTATAGGATACACATCAATGGCGGTATTGGGCTACTTAATGTATGGATCACAA 780
Query 781 ACATTATCACAAATAACACTGAATCTTCCAATTCATAAGACGAGTTCGAAGGTGGCAATA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 ACATTATCACAAATAACACTGAATCTTCCAATTCATAAGACGAGTTCAAAGGTGGCAATA 840
Query 841 TACACAACTCTCGTAAACCCGGTAGCCAAATACGCACTGATGATCACACCAACCGTGAAC 900
|||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TACACAACCCTTGTAAACCCGGTAGCCAAATACGCATTGATGATCACACCAACCGTGAAC 900
Query 901 ACTATAAAAGATTGGTTTCCTTCACGGTACT-CCAAAAAGGCATACTTACATCTCTTGAT 959
|| ||||||||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct 901 ACCATAAAAGATTGGTTTCCTTCACGTTA-TGCCAAAAAGACTTACTTACATCTCTTGAT 959
Query 960 AAGCACATTTTTCATCATAAGTAGTGTCGTGATCGCCGAGACACTTCCCTTTTTTGGTTA 1019
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 960 AAGCACATTTTTCATCATAAGTAGTGTCGTCATCGCCGAGACACTTCCCTTTTTCGGTTA 1019
Query 1020 TATGATGTCGCTGGTTGGAGCATTATTGAGCGTTACGGTTTCTATACTTCTGCCTTGTTT 1079
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1020 TATGATGTCGCTGGTTGGAGCATTACTGAGCGTAACGGTTTCTATACTTCTGCCTTGTTT 1079
Query 1080 ATGTTACTTGAAGATCTTTGGAAACTACAAGAAAATTGGGTGTGAGACTATAATGTTGTT 1139
||||||||||||||||| |||| | |||||||||||||| ||||||||||| ||||||||
Sbjct 1080 ATGTTACTTGAAGATCTATGGATATTACAAGAAAATTGGATGTGAGACTATTATGTTGTT 1139
Query 1140 TGGAATGGTAGTGATGAGTGTTTTTGTTGGGGTAATAGGTACTTACATTGCACTTCGAGA 1199
|||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct 1140 TGGAATGGTAGTGATGAGTGTTTTTGTTGGAGTTTTAGGTACTTACATTGCAATCCGAGA 1199
Query 1200 TATAATTGGTAGTGTATAA 1218
|||||||| |||||||||
Sbjct 1200 AATAATTGGAAGTGTATAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5