BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28970.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347271 jgi|Araly1|347271|fgenesh1_pg.C_scaffold_5000663 989 0.0
> Ahg347271 jgi|Araly1|347271|fgenesh1_pg.C_scaffold_5000663
Length=840
Score = 989 bits (535), Expect = 0.0
Identities = 613/650 (94%), Gaps = 8/650 (1%)
Strand=Plus/Plus
Query 379 GGTGGACTTTACGGAGTTTACTTGCTTTTACGATTTTGTTTTCTTTATGTGCCGCGAGAA 438
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GGTGGACTTTTCCGAGTTTACTTGCTTTTACGATTTTGTTTTCTTTATGTGCCGCGAGAA 257
Query 439 TGGGCAAAAGAATATAACTATAAGTAGAGCTATTACTGCATGGAAACTTGTTTTGGCTGG 498
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 258 TGGACAAAAGAATATAACTATAAGTAGAGCTATTACCGCATGGAAACTTGTTTTGGCTGG 317
Query 499 GAGATTTAGGTTACTTAACCGCTGGTGTGACTTTATCGAGAAAAATCAACGGCACAATAT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GAGATTTAGGTTACTTAACCGCTGGTGTGACTTTATCGAGAAAAATCAACGGCACAATAT 377
Query 559 TTCAGAAGATACTTGGCAACAAGTCTTGGCGTTTAGTCGTTGTGTACATGAGAATCTAGA 618
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 378 TTCAGAAGATACTTGGCAACAAGTCTTGGCTTTTAGTCGTTGTGTACATGAGAATCTAGA 437
Query 619 AGGATATGACTCTGAAGGTGCATGGCCTGTCCTAATAGATGACTTTGTCGAGCATATGTA 678
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 438 AGGATACGACTCTGAAGGTGCATGGCCTGTCCTAATCGATGATTTTGTCGAGCATATGTA 497
Query 679 CAGTATTTTAGGACCGAATAAGGACACTAGCTTGTTCTGCAAATGTGGTGACACAGAATC 738
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 498 CAGCATTTTAGGACCGAATAAGGACACTAGCTTGTTCTGCAAATGTGGTGACACCGAATC 557
Query 739 TGAATCATGCCTCTATCAAGAAGATGAGCATCACAAAGATTATCGCCGCCCACACACGGG 798
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 558 TGAATCATGCCTCTATCAAGAAGATGAGCATCACAAAGATTATCGCCGCCCCCACACAGG 617
Query 799 TTTAAGAAACATTCCAGGTTTaaagagaaaaacatcgaagaagaatgacgaagaagaaga 858
||||||||||||||||||||||||||||||| |||| || || |||| ||| ||||||||
Sbjct 618 TTTAAGAAACATTCCAGGTTTAAAGAGAAAAGCATCTAACAACAATGGCGACGAAGAAGA 677
Query 859 agatgaagatgaagaagTGTTAGAAACCCAAAACT-CTTCTTCTTTGCTAAACTTCAAAC 917
||||||||| | | | | |||||||||||||| || |||||| ||||||||||||||
Sbjct 678 AGATGAAGA--A-GTA-TC--AGAAACCCAAAACTACT-CTTCTTCGCTAAACTTCAAAC 730
Query 918 GAATCAAAACCAGCAACAGTCCAAGGTGTTCATCAAAGTCCCCTTGTTCAATCGAGCGAA 977
|||||||||||| | |||||||||| |||||||| ||||| |||||| ||||||||||||
Sbjct 731 GAATCAAAACCAACGACAGTCCAAGATGTTCATCCAAGTCTCCTTGTGCAATCGAGCGAA 790
Query 978 GTCTTTCACAAGGTTTTGCGAGTCTTTTATCGACTGGAGATAAACCATGA 1027
|||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 791 GTCTCTCACAAGGTTTTGCGAGTCTTTTATCGACTGGAGATAAGCCATGA 840
Score = 228 bits (123), Expect = 9e-59
Identities = 148/160 (93%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 222 TGTG-TAATAAGAAACCCTGTGATGGCGAAGAATCTCAAAGATTTAACTTGTCTAAAGAA 280
|||| | |||| |||||| |||| ||||||||||| |||||||||||||| |||||||||
Sbjct 4 TGTGATCATAATAAACCCGGTGACGGCGAAGAATCACAAAGATTTAACTTATCTAAAGAA 63
Query 281 GCAATAACTCAGCTCTTATATCTAGTAGAGAATAAGTTTCAAGCTAGGAACTCGATTTTT 340
||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 64 GCATTAGCTCAGCTTTTATATCTAGTAGAGCATAAGTTTCAAGCTAGGAACTCGATTTTT 123
Query 341 GATGAATTGTTTAAGTTGATGTCACGGCTAGACTTAATGG 380
||||||||||| ||||||||||||||||||||||||||||
Sbjct 124 GATGAATTGTTCAAGTTGATGTCACGGCTAGACTTAATGG 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5