BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28980.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936699 jgi|Araly1|936699|scaffold_500890.1 983 0.0
Ahg322957 jgi|Araly1|322957|fgenesh1_pm.C_scaffold_5000501 510 1e-143
Ahg936672 jgi|Araly1|936672|scaffold_500863.1 97.1 3e-19
> Ahg936699 jgi|Araly1|936699|scaffold_500890.1
Length=1511
Score = 983 bits (532), Expect = 0.0
Identities = 704/782 (90%), Gaps = 31/782 (4%)
Strand=Plus/Plus
Query 677 TGGGAAAGAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCCGC-TAAGAATGAAA 735
||| ||||||||||| |||||||| ||||||||||||||||||||| | ||| | |||
Sbjct 738 TGGTAAAGAAAGTGAAACTTCCGCCAAAGGTGAAAGTGAGACTTCCACGAAAG-GTAAAA 796
Query 736 GTAAGACTTCCGCTAAAGGCGAAAGTGAGACTTCCGCTAAAGGTGAGAGTAAGACTTCCG 795
|| |||||||||| ||||| |||||||||||||||||||||||| | ||| |||||||||
Sbjct 797 GTGAGACTTCCGCCAAAGGTGAAAGTGAGACTTCCGCTAAAGGTAAAAGTGAGACTTCCG 856
Query 796 CTAAAGGAGAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCCGCTAAAGGTGAAA 855
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 857 CTAAAGGTGAAAGTGAGACTTCAGCTAAAGGTGAAAGTGAGACTTCCGCTAAAGGTGAAA 916
Query 856 GTGAGACTTCTTCTTCAAAAA---CT-------G--C------CGAAGCTAGTCAGAGCA 897
||||||||||||||||||||| || | | |||||||||||||||||
Sbjct 917 GTGAGACTTCTTCTTCAAAAACTGCTGGGGGAAGCTCAAATGTCGAAGCTAGTCAGAGCA 976
Query 898 GCAGTTTAACAGTGACACAAGTGGAGGAAGAGACGTCAAAAGATGTTTCGACATTCATAA 957
||||| |||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 977 GCAGTGTAACCGTGACACAAGTCGAGGAAGAGACATCAAAAGATGTCTCGACATTCATAA 1036
Query 958 TGAACCTCGAAAAGAAGTGTCCACAAAAGGAGGAATTCAAGGTCTTCTTCGAGCAACTTA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGAACCTCGAAAAGAAGTGTCCACAAAAGGAGGAATTCAAGGTCTTCTTCGAGCAACTTA 1096
Query 1018 AGGGTACGATGATTGCTCCCCGAAAAGAAAGAAAAGGTTTGTTCTCTAGGATTAAAACTG 1077
||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 1097 AGGGTACAATGATTGCTCCCCGCAAAGAAAGAAAAGGTTTGTTTTCTAGGATTAAATCTG 1156
Query 1078 CTGCTGGGAAAATATCTGGTGCCATG-CAAGTTATGAGGTCAAGAATTGGAAGCAAATCA 1136
||||||||||| |||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 1157 CTGCTGGGAAACTATCTGGTGCCATGGCA-GTTATGCGGTCAAGAATTGGAAGCAAATCA 1215
Query 1137 GCAGAGGTAAAGAAGAATATGGAAGCTTACCAAGAACAAGTGATGAAGACTCTCGAAGAG 1196
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1216 GCTGAGGTAAAGAAGAATATGGAAGCTTACCAAGAACAAGTGATGACGACTCTCCAAGAG 1275
Query 1197 TTAGATACCATCCAC-GCTCAAATTGTGAGTCAGAACAAAGGCAAGGCTTCTTTGACATG 1255
||||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1276 TTAGATACCATCCACAG-TCAAATTGTGAGTCAGAACAAAGGCAAGGGTTCTATGACATG 1334
Query 1256 CACACCCACACAACAAGTACAGATTAAGCAGACAATCACCAAATGGGAACAAGTCACAAC 1315
||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1335 CACACCCGCACAACAAATGCAGATTAAGCAGACAATCACCAAATGGGAAAAAGTCACGAC 1394
Query 1316 CCAATTCGTTGAGGTTGCAGCTCAGAGTGAGTCGTC--TGCAtcttcgtcttcttcctct 1373
|||||||||||||||||||| |||||| |||||| | | | ||||| ||||||||||||
Sbjct 1395 CCAATTCGTTGAGGTTGCAGTTCAGAGCGAGTCG-CAAT-CGTCTTCCTCTTCTTCCTCT 1452
Query 1374 tcctcttcttcctcttcttccGGCAAGATGCAAGCAAAGTAAACTTGAAAGACAATAACT 1433
|| | | |||||||||||||||||||| | || || || |||||| ||| ||||||||||
Sbjct 1453 TC-T-T-CTTCCTCTTCTTCCGGCAAGCTTCAGGCGAATTAAACTCGAATGACAATAACT 1509
Query 1434 CA 1435
||
Sbjct 1510 CA 1511
Score = 902 bits (488), Expect = 0.0
Identities = 588/635 (93%), Gaps = 11/635 (2%)
Strand=Plus/Plus
Query 57 aaaaactaaaaaaaTAGAATAATGGCAAGAGTTCAACTATTGTTATGCTTCACCATTCTA 116
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACCAAAAAAAATAGAATAATGGCAAGAGTTCAACTATTGTTATGCTTCACCATTCTT 60
Query 117 TTTGCATCTGTGACCCTTCTTGACCTAGTATCAGCACACCTGAAATTTAAGCCATCTTTG 176
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TTTGCATCTGTGACCCTTCTGGACCTAGTATCAGCACACCTGAAATATAAGCCATCTTTG 120
Query 177 CCTCAAATCGAAGATCCAAAGACGGTGAAGGATGTAGAGCCTTACACCGTTAAAGTAGTA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCAAATCGAAGATCCAAAGACGGTGAAGGATGTAGAGCCTTACACCGTTAAAGTAGTA 180
Query 237 ATGGTCTTTGTGGCCGACCTCGAGAAGGAATGTCCC-AAGACAAACAAGTTCAAGGCCTT 295
|||||||||||||| ||||||||||||||||| ||| ||||||| || |||||||||||
Sbjct 181 ATGGTCTTTGTGGCGGACCTCGAGAAGGAATG-CCCGAAGACAAGTAAATTCAAGGCCTT 239
Query 296 CTTTGAGAAACTTAGAGGATTCGCCAAGTATGTTTGCCCAATAAGAAGGATTGGCCAAGT 355
||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||
Sbjct 240 CTTTGAGAAACTTAGGGGATTCGCCAAGTATGTTTGCCCAATAAGAAGAAGAGATCAAGT 299
Query 356 AGATTACGACCGGGACATGAAGGCCAAAGCCGGGGGTATCTTCAAGGCCATATCTTCTTT 415
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 AGATTACGACCGAGACCTGAAGGCCAAAGCCGGGGGTGTCTTCAAGGCCATATCTTCTTT 359
Query 416 TGCGATTGGAAAGATTAGGGAGGAAATTCAAGAGGA-AAAACAGGAGGCTATTGATACCT 474
||| |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||
Sbjct 360 TGCTATTGGAAAGATTAGGGAGGAAATTCAAGAGGAGAAAAT-GGAGGCCATTAATACCT 418
Query 475 TTAGGTTCATGAAATCTGTCGCGGCTAAAATTATGGGAGGTCGTAAGAAAGAGGAGAATG 534
||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||| ||
Sbjct 419 TTAGGTTTATGAAATCTGTGGCGGCTAAAATTATGGGCGGTCGTAAAAAAGAGGAGAGTG 478
Query 535 AAGAAACCATGACACTAACAGCTGAACAACAAAAGGAAATCAAAGAAGGAATCTTGAAAT 594
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGAAACCATGAAACTAACAGCAGAACAACAAAAGGAAATCAAAGAAGGAATCTTGAAAT 538
Query 595 GGGAAACCATTATTACTCGGATCACAAACACAATGGTA-TCGAGCACATC-AACCTCTGC 652
||||||| |||||||||||||||||||||||||||||| | ||||||| | || |||||
Sbjct 539 GGGAAACAATTATTACTCGGATCACAAACACAATGGTAAT-GAGCACAACCAAT-TCTGC 596
Query 653 TTCTTCCAGTGAAGAGTCTAGTGTTGGGAAAGAAA 687
||| | ||||||| ||||| ||||| |||||||
Sbjct 597 TTC--CG-GTGAAGAATCTAGCGTTGGAAAAGAAA 628
Score = 204 bits (110), Expect = 2e-51
Identities = 144/160 (90%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 708 GAAAGTGAGACTTCCG-CTAAGAATGAAAGTAAGACTTCCGCTAAAGGCGAAAGTGAGAC 766
|||||||| ||||||| | ||| ||||||| |||||||| | ||||| ||||||||||
Sbjct 745 GAAAGTGAAACTTCCGCCAAAG-GTGAAAGTGAGACTTCCACGAAAGGTAAAAGTGAGAC 803
Query 767 TTCCGCTAAAGGTGAGAGTAAGACTTCCGCTAAAGG-AGAAAGTGAGACTTCCGCTAAAG 825
|||||| |||||||| ||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 804 TTCCGCCAAAGGTGAAAGTGAGACTTCCGCTAAAGGTA-AAAGTGAGACTTCCGCTAAAG 862
Query 826 GTGAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTC 865
|||||||||||||||| |||||||||||||||||||||||
Sbjct 863 GTGAAAGTGAGACTTCAGCTAAAGGTGAAAGTGAGACTTC 902
Score = 182 bits (98), Expect = 9e-45
Identities = 123/135 (91%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 732 GAAAGT-AAGACTTCCGCTAAAGGCGAAAGTGAGACTTCCGCTAAAGGTGAGAGTAAGAC 790
|||||| || |||||||| ||||| ||||||||||||||| | |||||| | ||| ||||
Sbjct 745 GAAAGTGAA-ACTTCCGCCAAAGGTGAAAGTGAGACTTCCACGAAAGGTAAAAGTGAGAC 803
Query 791 TTCCGCTAAAGGAGAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCCGCTAAAGG 850
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 804 TTCCGCCAAAGGTGAAAGTGAGACTTCCGCTAAAGGTAAAAGTGAGACTTCCGCTAAAGG 863
Query 851 TGAAAGTGAGACTTC 865
|||||||||||||||
Sbjct 864 TGAAAGTGAGACTTC 878
Score = 148 bits (80), Expect = 9e-35
Identities = 101/111 (91%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 756 GAAAGTGAGACTTCCGCTAAAGGTGAGAGTAAGACTTCCGCTAAAGG-AGAAAGTGAGAC 814
|||||||| |||||||| |||||||| ||| |||||||| | ||||| | ||||||||||
Sbjct 745 GAAAGTGAAACTTCCGCCAAAGGTGAAAGTGAGACTTCCACGAAAGGTA-AAAGTGAGAC 803
Query 815 TTCCGCTAAAGGTGAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTC 865
|||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 804 TTCCGCCAAAGGTGAAAGTGAGACTTCCGCTAAAGGTAAAAGTGAGACTTC 854
Score = 124 bits (67), Expect = 2e-27
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 685 AAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCCGCTAA-GAATGAAAGTAAGACT 743
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||
Sbjct 842 AAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCAGCTAAAGG-TGAAAGTGAGACT 900
Query 744 TCCGCTAAAGGCGAAAGTGAGACTTC 769
||||||||||| ||||||||||||||
Sbjct 901 TCCGCTAAAGGTGAAAGTGAGACTTC 926
Score = 87.9 bits (47), Expect = 2e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 684 GAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCCGCTAA-GAATGAAAGTAAGAC 742
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 865 GAAAGTGAGACTTCAGCTAAAGGTGAAAGTGAGACTTCCGCTAAAGG-TGAAAGTGAGAC 923
Query 743 TTC 745
|||
Sbjct 924 TTC 926
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 684 GAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTC 721
||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTC 926
> Ahg322957 jgi|Araly1|322957|fgenesh1_pm.C_scaffold_5000501
Length=1332
Score = 510 bits (276), Expect = 1e-143
Identities = 400/457 (88%), Gaps = 20/457 (4%)
Strand=Plus/Plus
Query 885 GCTAGTCAGAGCAGCAGTTTAACAGTGA-CACAAGTGGAGGAAGAGACGTCAAAAGATGT 943
|||||||||||||| || ||||||| | ||||||| ||||||||||| || ||||||||
Sbjct 811 GCTAGTCAGAGCAGTGGTGTAACAGT-AGCACAAGTTGAGGAAGAGACTTCCAAAGATGT 869
Query 944 TTCGACATTCATAATGAACCTCGAAAAGAAGTGTCCACAAAAGGAGGAATTCAAGGTCTT 1003
||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 870 CTCGACATTCATAATGAACCTCGAAAAGAAATGTCCGCAAAAAGAGGAATTTAAGGTCTT 929
Query 1004 CTTCGAGCAACTTAAGGGTACGATGATTGCTCCC-CGAAAAGAAAGAAAAGGTTTGTTCT 1062
|||||||||||| |||||||| |||| ||||||| | ||| ||||||||||||||||| |
Sbjct 930 CTTCGAGCAACTCAAGGGTACAATGACTGCTCCCGCCAAA-GAAAGAAAAGGTTTGTTTT 988
Query 1063 CTAGGATTAAAACTGCTGCTGGGAAAATATCTGGTGCCATG-CAAGTTATGAGGTCAAGA 1121
||||||||||| |||||||||||||| |||||||||| ||| || |||||| | || |||
Sbjct 989 CTAGGATTAAATCTGCTGCTGGGAAACTATCTGGTGCGATGGCA-GTTATGCGATCTAGA 1047
Query 1122 ATTGGAAGCAAATCAGCAGAGGT-AAAGAAGAATATGGAAGCTTACCAAGAACAAGTGAT 1180
||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||
Sbjct 1048 ATTGGAAGCAAATCAGCAGAGGTTAAA-AAGTCTATGGAAACTTACCAAGAACAAGTGAT 1106
Query 1181 GAAGACTCTCGAAGAGTTAGATACCATCCAC-GCTCAAATTGTGAGTCAGAACAAAGGCA 1239
||| |||||| |||||||||||||||| ||| | |||||||||||||||||| ||||| |
Sbjct 1107 GAAAACTCTCCAAGAGTTAGATACCATTCACAG-TCAAATTGTGAGTCAGAATAAAGGAA 1165
Query 1240 AG---GCT---TCTTTGACATGCACACCCA-CACAACAAG-TACAGATTAAGCAGACAAT 1291
|| | ||||||||||||||||| | |||||||| | |||||||||||||||||
Sbjct 1166 AGAAAGAAGGATCTTTGACATGCACACC-AGCACAACAAACT-CAGATTAAGCAGACAAT 1223
Query 1292 CACCAAATGGGAACAAGTCACAACCCAATTCGTTGAG 1328
|| || |||||||||||||||||||||||||| |||
Sbjct 1224 TACTAAGTGGGAACAAGTCACAACCCAATTCGTGGAG 1260
Score = 73.1 bits (39), Expect = 6e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 838 CTTCCGCTAAAGGTGAAAGTGAGACTTCTTCTTCAAAAACTGCCG 882
|||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 710 CTTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAACTACCG 754
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 694 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 722
|||||||||||||||||||||||||||||
Sbjct 710 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 738
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 814 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 842
|||||||||||||||||||||||||||||
Sbjct 710 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 738
> Ahg936672 jgi|Araly1|936672|scaffold_500863.1
Length=1631
Score = 97.1 bits (52), Expect = 3e-19
Identities = 73/82 (89%), Gaps = 6/82 (7%)
Strand=Plus/Plus
Query 1250 GACA-TGCACACCCACACAACAAGTACAGA--TTAAGCAGACAATCACCAAATGGGAACA 1306
|||| || ||| | ||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct 1455 GACAGTG-ACATCAACACAAC-AG-ACAGAGCTTAAGCAGACAATCACCAAGTGGGAACA 1511
Query 1307 AGTCACAACCCAATTCGTTGAG 1328
||||||||||||||||||||||
Sbjct 1512 AGTCACAACCCAATTCGTTGAG 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5