BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28990.1

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936700 jgi|Araly1|936700|scaffold_500891.1                        315    1e-85


> Ahg936700 jgi|Araly1|936700|scaffold_500891.1
Length=292

 Score =  315 bits (170),  Expect = 1e-85
 Identities = 206/223 (92%), Gaps = 4/223 (2%)
 Strand=Plus/Plus

Query  63   GTGCAACACATGATAGAGACATGTTTGACCTTTAACATGAGCAAAGAGGAATGCATGGAA  122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  30   GTGCAACACATGATAGAGACATGTTTGACCTTTAACATGAGCAAAGAGGAATGCATGGAA  89

Query  123  GCTCTCTCAGAGAATGCAAACATCAATCCCATCATCACGTCCACTGTTTGGAAGGAGCTG  182
            ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| 
Sbjct  90   GCTCTCTCAAAGAATGCAAACATCAATCCCATCATCACGTCCTCTGTGTGGAAGGAGCTT  149

Query  183  GTTAAAGAGAACAAGGACTTCTTTGAGACGTACGAGCAGAAGCTTATGAAAAAGGAATCA  242
            || |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| ||
Sbjct  150  GTCAAAGAGAACAAGGACTTCTTCGAGGCGTACGAGCAGAAGCTTGTGAAAAATGAA-CA  208

Query  243  A-TGTCGGAGGAGGAGACAAACCA-ATTAATTCAGAACATCAT  283
            | | |||||||| || |||||||| || | |||||||||||||
Sbjct  209  AATTTCGGAGGAAGAAACAAACCAGATGA-TTCAGAACATCAT  250



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10263853441


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5