BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29000.1 Length=636 Score E Sequences producing significant alignments: (Bits) Value Ahg484667 jgi|Araly1|484667|fgenesh2_kg.5__659__AT3G29000.1 411 4e-114 > Ahg484667 jgi|Araly1|484667|fgenesh2_kg.5__659__AT3G29000.1 Length=550 Score = 411 bits (222), Expect = 4e-114 Identities = 311/353 (88%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 255 TGATATTTCTAGAGAAGAGGCAGAGATGGTTATGAGAAGCTTAGGGCTTTTTT---A-C- 309 |||| ||||||| ||||| |||||||||||||||||||| ||| ||||||| | | Sbjct 198 TGATCTTTCTAGGGAAGACGCAGAGATGGTTATGAGAAGTTTATCACTTTTTTCCGACCA 257 Query 310 ---AA-CGATGATCAGCTTCAAGAACAATACAGTGCAAAAGAAGTCTCGAGTTTGTTCGA 365 || |||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct 258 AGAAAGCGATGATCAGCTTCAAGAACGGTACAGTGCGAAAGAAGTTTCAAGTTTGTTCGA 317 Query 366 AGAGAAAGAAGCGAGTTTGGAAGAAGTCAAACAAGCTTTTGATGTGTTTGACGAAAACAA 425 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 318 AGAGAAAGAAGCGAGTTTGGAAGAAGTGAAACAAGCTTTTGATGTGTTTGATGAAAACAG 377 Query 426 AGATGGTTTCATTGATGCTATAGAGTTACAGAGAGTTTTGACAATCTTAGGGTTTAAACA 485 |||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||| | Sbjct 378 AGATGGTTTCATTGATGCTATAGAGTTACAAAAAGTTTTGACAACCTTAGGTTTTAAAGA 437 Query 486 AGGATCTTACTTAGACAATTGTTTGGTAATGATTAGGTCATTAGATGGGAACAAAGATGG 545 | || |||||||||||||||| ||||||||||||||| |||| ||||| |||||||| || Sbjct 438 AAGAGCTTACTTAGACAATTGCTTGGTAATGATTAGGACATTCGATGGAAACAAAGACGG 497 Query 546 AAAAATCGATTTTAACGAGTTTGTTAAATTCATGGAGACTAGCTTTTATTGAA 598 |||| |||||||| |||||||||| ||||||||||||| ||| |||| ||||| Sbjct 498 AAAACTCGATTTTTACGAGTTTGTGAAATTCATGGAGAATAGTTTTTGTTGAA 550 Score = 289 bits (156), Expect = 2e-77 Identities = 186/200 (93%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 1 CAAAACATAACCATGGAGTCGAAATCTTCTTCTTCTTCTCTACCTTTGTTTGCTCTGTTC 60 ||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||| Sbjct 1 CAAAACATAACCATGGAGTCGAAATCTTCTTCTTC-TCT-T-CCTTTGTTTACTCTGTTC 57 Query 61 AATTTTTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACACGTATCTTTTTATCAAGA 120 || || ||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 58 AACTTCTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACTCGCATCTTTTTATCAAGA 117 Query 121 TTCGTCCCTCTTCTTCAACATCATCAACGCGTTTTCGACAAAAAGAACAACAAAGACCAA 180 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 118 TTCGTCCCTCTTCTTCAACATCATCAACGTGTTTTCGACAAAAATAACAACAAAGATCAA 177 Query 181 CAAGAGACTTTGACCAAACA 200 ||||||| ||| | |||||| Sbjct 178 CAAGAGAGTTTAATCAAACA 197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23293102287 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5