BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29000.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484667 jgi|Araly1|484667|fgenesh2_kg.5__659__AT3G29000.1 411 4e-114
> Ahg484667 jgi|Araly1|484667|fgenesh2_kg.5__659__AT3G29000.1
Length=550
Score = 411 bits (222), Expect = 4e-114
Identities = 311/353 (88%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 255 TGATATTTCTAGAGAAGAGGCAGAGATGGTTATGAGAAGCTTAGGGCTTTTTT---A-C- 309
|||| ||||||| ||||| |||||||||||||||||||| ||| ||||||| | |
Sbjct 198 TGATCTTTCTAGGGAAGACGCAGAGATGGTTATGAGAAGTTTATCACTTTTTTCCGACCA 257
Query 310 ---AA-CGATGATCAGCTTCAAGAACAATACAGTGCAAAAGAAGTCTCGAGTTTGTTCGA 365
|| |||||||||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct 258 AGAAAGCGATGATCAGCTTCAAGAACGGTACAGTGCGAAAGAAGTTTCAAGTTTGTTCGA 317
Query 366 AGAGAAAGAAGCGAGTTTGGAAGAAGTCAAACAAGCTTTTGATGTGTTTGACGAAAACAA 425
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 318 AGAGAAAGAAGCGAGTTTGGAAGAAGTGAAACAAGCTTTTGATGTGTTTGATGAAAACAG 377
Query 426 AGATGGTTTCATTGATGCTATAGAGTTACAGAGAGTTTTGACAATCTTAGGGTTTAAACA 485
|||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||| |
Sbjct 378 AGATGGTTTCATTGATGCTATAGAGTTACAAAAAGTTTTGACAACCTTAGGTTTTAAAGA 437
Query 486 AGGATCTTACTTAGACAATTGTTTGGTAATGATTAGGTCATTAGATGGGAACAAAGATGG 545
| || |||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||
Sbjct 438 AAGAGCTTACTTAGACAATTGCTTGGTAATGATTAGGACATTCGATGGAAACAAAGACGG 497
Query 546 AAAAATCGATTTTAACGAGTTTGTTAAATTCATGGAGACTAGCTTTTATTGAA 598
|||| |||||||| |||||||||| ||||||||||||| ||| |||| |||||
Sbjct 498 AAAACTCGATTTTTACGAGTTTGTGAAATTCATGGAGAATAGTTTTTGTTGAA 550
Score = 289 bits (156), Expect = 2e-77
Identities = 186/200 (93%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 1 CAAAACATAACCATGGAGTCGAAATCTTCTTCTTCTTCTCTACCTTTGTTTGCTCTGTTC 60
||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||
Sbjct 1 CAAAACATAACCATGGAGTCGAAATCTTCTTCTTC-TCT-T-CCTTTGTTTACTCTGTTC 57
Query 61 AATTTTTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACACGTATCTTTTTATCAAGA 120
|| || ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 58 AACTTCTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACTCGCATCTTTTTATCAAGA 117
Query 121 TTCGTCCCTCTTCTTCAACATCATCAACGCGTTTTCGACAAAAAGAACAACAAAGACCAA 180
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 118 TTCGTCCCTCTTCTTCAACATCATCAACGTGTTTTCGACAAAAATAACAACAAAGATCAA 177
Query 181 CAAGAGACTTTGACCAAACA 200
||||||| ||| | ||||||
Sbjct 178 CAAGAGAGTTTAATCAAACA 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5