BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29010.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896848 jgi|Araly1|896848|Al_scaffold_0005_814 1192 0.0
> Ahg896848 jgi|Araly1|896848|Al_scaffold_0005_814
Length=789
Score = 1192 bits (645), Expect = 0.0
Identities = 743/791 (94%), Gaps = 4/791 (1%)
Strand=Plus/Plus
Query 24 ATGAGTTTAAGTAGAG-CAAAGGATTTGAGACTTCCGTTGATGAATTTGGTTAGACTTAA 82
|||||||||||||||| |||| |||||||| ||||| ||||||||| |||||||||||||
Sbjct 1 ATGAGTTTAAGTAGAGTCAAA-GATTTGAGGCTTCCATTGATGAATCTGGTTAGACTTAA 59
Query 83 AGGTACACCAATTTTGGAGCAACTTCATTTAGAAGAAAGGCTTCTTAGAACATCTTCTGA 142
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGAACACCGATTCTGGAGCAACTTCATTTAGAAGAAAGGCTTCTTAGAACATCTTCTGA 119
Query 143 TAATTGGTGCATTGTTAATGATGGAACCAATGTTCCTACCATTGTGATGGGAATGTCAGG 202
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TAATTGGTGCATTGTTAATGATGGAACCAATGTTCCTACCATTGTCATGGGAATGTCAGG 179
Query 203 GAAGCCTTCTCAGCTTCTTGAGGTTGGACCAGTTATGGAAGATCGAATACCGGTGATTAA 262
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GAAGCCTTCTCAGCTTCTTGAGGTTGGACCTGTTATGGAAGATCGAATACCGGTGATTAA 239
Query 263 ACGATTTACGGGAGGAGGAACTGTGATTGTGGATAAGAGTACTTTGTTTGTGAGTTTGAT 322
| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 AAGATTTACGGGAGGAGGGACTGTGATTGTTGATAAGAGTACTTTGTTTGTGAGTTTGAT 299
Query 323 TTGTAACAAGGATGATGTACCAAATGTTCAGCCTTATCCTCGTTCTGTTATGGCTTGGAG 382
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 300 TTGTAACAAGGATGATGTACCAAATGTCCAGCCTTATCCTCGTTCTGTTATGGCGTGGAG 359
Query 383 TGGTTCGTTGTATGATGAAGTGTTTAAGAGTGTTAATGGTTTCCAACTACGTGAGAATGA 442
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 360 CGGTTCGTTGTATGGTGAAGTGTTTAAGGGTGTTAATGGTTTCCAACTACGTGAGAACGA 419
Query 443 TTATGTGTTTGGTGATCGTAAGTTCGGTGGGAATGCTCAATCGATAATTAAGAATAGATG 502
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TTATGTTTTTGGTGATCGTAAGTTTGGTGGGAATGCTCAATCGATAATTAAGAATAGATG 479
Query 503 GATTCACCATACTTCATTTCTATGGGACTATGATGTGAGAAACATGGCTTACCTTAAGCT 562
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 480 GATACACCATACGTCATTTCTATGGGACTACGATGTGAGAAACATGGCTTACCTTAAACT 539
Query 563 GCCTTCGAGAGTGCCACAGTACCGGTTGGAAAGAGATCACACAGATTTCGTGTGTAGAAT 622
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GCCTTCGAGAGTGCCTCAATACCGGTTGGAAAGAGATCACACAGAATTCGTGTGTAGAAT 599
Query 623 GAAGGATTACATTGAAAGATCAGATTTTGTTGAGAAGACAGTAAAAGCTGTAAGGAA-CC 681
|||||| |||||||||||||| |||||| |||||||||||||||| ||||| |||| ||
Sbjct 600 GAAGGAGTACATTGAAAGATCGGATTTTATTGAGAAGACAGTAAAGGCTGTG-GGAAACC 658
Query 682 AATTCACATTGAAGCAAGTGAACCTTGAAGATATTGATTCCTATGCGAAAGGAGGATATT 741
||||| |||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 659 AATTCTCATTGAAGCAAGTGAACCTTGAGGATATCGATTCCTATGCAAAAGGCGGATATT 718
Query 742 TGAAGACTACGAGGCTTCTTACGATGGAAGAACTCGAAGAAGCAATGGCTGATACCATTC 801
||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||| | ||
Sbjct 719 TGAAGACCACGAGGCTTCTTACAATGGAAGAAATCGAAGAAGCAATGGCTGGTACAACTC 778
Query 802 AAAACACATGA 812
| ||| |||||
Sbjct 779 AGAACGCATGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5