BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29020.2
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936703 jgi|Araly1|936703|scaffold_500894.1 1399 0.0
> Ahg936703 jgi|Araly1|936703|scaffold_500894.1
Length=956
Score = 1399 bits (757), Expect = 0.0
Identities = 904/970 (93%), Gaps = 29/970 (3%)
Strand=Plus/Plus
Query 18 GTTATAGAAGAGAGACTAACATGAAGATGGATTTTTCATGTTTCCAAGAATACCCTTTTG 77
||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4 GTTATAG-A-AGAGACTAACATGGAGATGGATTTTTCATGTTTCCAAGAATACCCTTTTG 61
Query 78 AGTTTCATTGCAGAGGAACAACATTTAATGGGTTTAGAGAAAACAATGCAGTGTCTGAAA 137
|||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 62 AGTTCCATTGCAGAGG---AACATTTAATGGGTTTGGAGAAAACAATGCAGTG--T---- 112
Query 138 CAGTAGAAGAGTTCTGTAATAAaagaaggatgcagaagaagagtgatga-tt--tgaaga 194
| | |||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 113 C--T-GAAGAGTTCTGTAATAAACGAAGGATGCAGAAGAAGAGTGATGACTTGGAGAAGA 169
Query 195 ctaagaagaagaagaaACAGAGTGTTTCTAGGGTTTGTAGTAGAGGACATTGGAGGATCT 254
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 170 AGAAGAAGAAGAAGAAACAGAGTGGTTCTAGGGTTTGTAGTAGAGGACATTGGAGGATTT 229
Query 255 CTGAAGATACTCAGCTTATGGAGCTTGTTTCGGTTTACGGTCCTCAAAACTGGAACCACA 314
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CTGAAGATTCTCAGCTTATGGAGCTTGTTTCGGTTTACGGTCCTCAAAACTGGAACCACA 289
Query 315 TTGCAGAGAGTATGCAAGGAAGAACAGGAAAGAGCTGCAGATTGAGGTGGTTTAACCAGT 374
||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 290 TTGCAGAGAATATGCAAGGAAGAACAGGCAAGAGTTGCAGATTGAGGTGGTTTAACCAGT 349
Query 375 TAGATCCGAGGATTAACAAGAGAGCTTTCAGTGATGAAGAAGAAGAGAGACTACTTGCTG 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 350 TAGATCCGAGGATTAACAAGAGAGCTTTCAGTGATGAAGAAGAAGAGAGACTACTTGCAG 409
Query 435 CTCATAGAGCTTTTGGTAACAAATGGGCTATGATTGCTAAGCTTTTCAATGGAAGAACAG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CTCATAGAGCTTTTGGTAACAAATGGGCTATGATTGCTAAGCTTTTCAATGGAAGAACAG 469
Query 495 ATAATGCCTTGAAGAATCATTGGCATGTTCTCATGGCAAGGAAGATGAGACAGCAATCAA 554
| ||||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 470 ACAATGCTTTAAAGAATCACTGGCATGTCCTCATGGCAAGAAAGATGAGACAGCAATCAA 529
Query 555 GTTCTTACGTCCAAAGATTCAATGGTTCTGCTCATGAATCTAACACAGATCACAAAATCT 614
|||||||||||||||||||||||| ||||||||| || ||||||||||||| |||||||
Sbjct 530 CTTCTTACGTCCAAAGATTCAATGGGTCTGCTCATAAACCTAACACAGATCAGAAAATCT 589
Query 615 TCAATCTTTCTCCTGGTAATGTAGATGATGATGAAGATGTGAATCTGAAAAAGTGCAGCT 674
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 590 TCAATCTTTCTCCTGGTAATGTAGATGATGATGAAGATATGGATCTGAAAAAGTGCAGCT 649
Query 675 GGGAAATGCTAAAAGAGGGAACTACTAACCTGAAAGCTCAGTATCTCCAAGAAGAATATA 734
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GGAAAATGCTAAAAGAGGGAACTACTAACCTGAAAGCTCAGTATCTCCAAGAAGAATATT 709
Query 735 GTTCTTCACGCATGCCGATGCAGGGTCCACATCATCACTACTCAACCTTCCCTGCAGATT 794
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 710 GTTCTTCACGCATGCCGATGCAGGGTCCACATCATCCCTACTCAACCTTCCCTGCAGATT 769
Query 795 CCTTGGCACTGACACTGCATGTCTCCATCCAGGAACcatcatcatcatc---------gt 845
||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 770 CCTTGGCACTGACACTGCATGTCTCCATCCAGGAACCATCATCATCATCATCATCTTCGT 829
Query 846 cattatcactgccatcatcatcaACAACTGGAGAACATACAATGGTGACCAGATATTTTG 905
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 830 CATTATCACTGCCATCATCATCAAG---TGCACAACATACAATGGTGACCAGATATTTTG 886
Query 906 AGACCATTAAACCTCCAGCATTTATAGATTTTCTAGGAGTTGGTCACTAAAGCTCTAACA 965
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 887 AGACCATTAAACCTCCAACATTTATAGATTTTCTAGGAGTTGGTCACTAAAACTCCAACA 946
Query 966 TTTAGAGTGG 975
| ||||||||
Sbjct 947 TGTAGAGTGG 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5