BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29030.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484671 jgi|Araly1|484671|fgenesh2_kg.5__663__AT3G29030.1 1792 0.0
> Ahg484671 jgi|Araly1|484671|fgenesh2_kg.5__663__AT3G29030.1
Length=1195
Score = 1792 bits (970), Expect = 0.0
Identities = 1149/1229 (93%), Gaps = 38/1229 (3%)
Strand=Plus/Plus
Query 57 AATTAAATTATAATAAGTATAGTGAAGACCAATAAGCAGTTGCATGGACCCTGATTGATT 116
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AATTAAATTAAAATAAGTATAGTGAAGACCAATAAGCAATTGCATGGACCCTGATTGATT 60
Query 117 CATTACCGCTAAAACTTTGTCTGAATCCTTCTTCCTATTTATACCACTCTCTTCTTCTTC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTACCGCTAAAACTTTGTCTGAATCCTTCTTCCTATTTATACCACTCTCTTCTTCTTC 120
Query 177 TCCAGTTTCATCACACCAAACTTCTCACATCTCCTCATTCTGTATTTTGACaaaaaaaaa 236
|||| |||||| ||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 121 TCCATTTTCATTACACCGAACTTCTCACATCTCCACATTCTGTATTTTGAC------GAA 174
Query 237 aCACCCTTTGTTTTTTCTCTCCTTTGCATGTTGTGATTGTTTTTGCTTCACAACATGGGA 296
| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 A-A------------TCTCTCCTTTGCATGTTGTGATT-CTTTTGCTTCACAACATGGGC 220
Query 297 GTTTTAGTAATCTCGCTTCTCGTGGTTCATCTCCTAGCTTTTTCCGTCTGCGTTCAGGGC 356
||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||| |||
Sbjct 221 GTTTTAGTAATCTCGGTTCTTGTGGTGCATCTCCTAGTTTTTTCCGTCTGCGTTCAAGGC 280
Query 357 GGCTACCGTCGTGGCGGACACCATCCCGGCGGTCACATGGGACCTTGGATCAACGCTCAT 416
| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 281 GTATACCGTCGTGGTGGCCACCATCCCGGCGGCCACATGGGACCTTGGATCAACGCTCAT 340
Query 417 GCCACTTTTTACGGCGGCGGTGATGCTTCCGGCACTATGGGTGGAGCATGCGGGTACGGC 476
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 341 GCCACATTTTACGGCGGCGGTGACGCTTCCGGCACTATGGGTGGAGCATGCGGGTACGGG 400
Query 477 AATCTGTATAGCCA-AGGTTATGGACTGGAGACGGCAGCGCTGAGCACAGCGTTATTCGA 535
|||||||| || || ||||||||||||||||||||| || |||||||||| ||||| ||
Sbjct 401 AATCTGTACAG-CACAGGTTATGGACTGGAGACGGCGGCATTGAGCACAGCTTTATTTGA 459
Query 536 CCAAGGACTTAGTTGTGGCGCATGTTTTGAGCTGATGTGTGTCAACGATCCTCAATGGTG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CCAAGGACTTAGTTGTGGCGCATGTTTTGAGCTGATGTGTGTCAACGATCCTCAATGGTG 519
Query 596 CATAAAAGGCCGATCCATTGTGGTCACTGCCACTAACTTTTGTCCTCCTGGTGGTGCATG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CATAAAAGGCCGATCCATTGTGGTCACTGCCACTAACTTTTGTCCTCCTGGTGGTGCATG 579
Query 656 CGACCCTCCCAACCACCATTTCGATCTTTCTCAGCCGATCTACGAGAAAATTGCTCTCTA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 580 TGACCCTCCCAACCACCATTTCGATCTTTCTCAGCCGATCTACGAGAAAATTGCTCTATA 639
Query 716 CAAATCCGGTATCATTCCCGTTATGTATAGAAGGGTTCGGTGCAAGAGAAGTGGTGGGAT 775
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 640 CAAATCCGGTATCATTCCGGTTATGTACAGAAGGGTTCGGTGCAAGAGAAGTGGCGGGAT 699
Query 776 AAGGTTCACGATCAACGGCCACTCATACTTTAACTTGGTGTTGGTCACAAACGTGGGTGG 835
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 AAGGTTCACGATCAATGGCCACTCATACTTTAACTTGGTGTTGGTCACAAACGTGGGTGG 759
Query 836 AGCCGGGGACGTACACTCGGTCTCAATGAAAGGGTCGAGGACAAAATGGCAATTAATGTC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGCCGGGGACGTACACTCGGTCTCAATGAAAGGGTCGAGGACAAAATGGCAATTAATGTC 819
Query 896 GAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTATCTCAATGGTCAAAGTCTGTCGTT 955
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 820 AAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTATCTTAATGGTCAAAGTCTGTCGTT 879
Query 956 TGTTGTTACCACAAGTGATCGTCGAAGTGTCGTCTCTTTTAATGTTGCACCACCCACTTG 1015
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 880 TGTTGTTACCACAAGTGATCGTCGAAGTGTCGTCTCGTTTAATGTTGCACCTCCCACTTG 939
Query 1016 GTCCTTTGGCCAGACCTACACCGGAGGGCAGTTTCGGTATTAATTATATATAATCGGTT- 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GTCCTTTGGCCAGACCTACACCGGAGGGCAGTTTCGGTATTAATTATATATAATCGGTTT 999
Query 1075 -CGGTTTGTTATTGTGCtttttttttttttttCGGTTCCAAGTTGGGGACTCTTTTTTGG 1133
|| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1000 TCGTTTTGTTATTGTG-TTTTTTTTTTTT---CGGTTCCAAGTTGGGGACTCTTTTTTGG 1055
Query 1134 TAACCAATTGAGATTGGGACTGATAGTGATATGTAGCGAATATATGTGTGGGAACGAGAA 1193
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1056 TAACCAATTGAGATTGGGGCTGATAGTGATATGTAGCGAATAT--GTGTGGGAACGAGAA 1113
Query 1194 AAAGAGAAGTTTTATTAATTCTCGTTTT-ATAATATAAGAAAATGAAAGTGATGTTATGT 1252
| ||| |||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 AGAGAAAAGT---AT-AATTCTCGTTTTTATAATATAAGAAAATGAAAGTGATGTTATGT 1169
Query 1253 ATTTTGCTTTTTAATTAATTTGAGTACTA 1281
|||| | |||| |||||||||||||||||
Sbjct 1170 ATTT-G-TTTT-AATTAATTTGAGTACTA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5