BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29034.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484672 jgi|Araly1|484672|fgenesh2_kg.5__664__AT3G29034.1          544    4e-154


> Ahg484672 jgi|Araly1|484672|fgenesh2_kg.5__664__AT3G29034.1
Length=478

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 440/504 (87%), Gaps = 35/504 (7%)
 Strand=Plus/Plus

Query  1    AATCTCTTCATTCATCaaagaatcttaaaaatggtgagagaaagaagaaagacggagaaa  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AATCTCTCCATTCATCAAAGAATCTTAAAAATGGTGAGAGAAAGAAGAAAGACGGAGAAA  60

Query  61   gtagaagagaaacgagaacaagaagttgtagatcaagaagagaaggtgaagccgaggcaa  120
            |||||||||||  |    ||||||||||||||||||||||||||||||||||| || |||
Sbjct  61   GTAGAAGAGAA--G----CAAGAAGTTGTAGATCAAGAAGAGAAGGTGAAGCCAAGACAA  114

Query  121  agaagCGTGAGCAGAAGAAACATGCAATCTCTGGTCATCGGACTCGTTGGAGGTGCGTTA  180
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||
Sbjct  115  AGAAGTGTGAGCAGAAGAAACATGCAATCTCTGGTGATCGGACTCGTTGGAGCCGCGTTA  174

Query  181  ACCCTCGGTGCTTATTCTCAGACATATGTTGATCCGGGCAAGTCTATTGGCGCTGGCCTC  240
            || |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct  175  ACTCTCGGTGCTTATTCTCAGACATATGTTGATCCGGGCAAATCTCTTGGCGCTGGCCTC  234

Query  241  TTTGTCCTCTTCTTTGGCTTGCTTGTCAGTGAAGGTTTCATCTCTCTTTAAATAACAAT-  299
            ||||| |||||||||||||| |||||||| |||||||||||||||||||||| || ||| 
Sbjct  235  TTTGTTCTCTTCTTTGGCTTACTTGTCAGCGAAGGTTTCATCTCTCTTTAAA-AAGAATG  293

Query  300  ATTTCTGTATAAGCAAATCAAACCTTCTTCTTTTGTTTATGTATATGACAAATAT-AC-A  357
            ||| || ||||||||||| ||||||| || |||||||||||||| | ||||| || || |
Sbjct  294  ATT-CTATATAAGCAAATTAAACCTTTTTTTTTTGTTTATGTATGTTACAAA-ATTACGA  351

Query  358  -TATCTATGAGCATCTTGTTTCATTTATATTTTATTTCACTTGTTG-G-AT--CTTGGAC  412
             ||||| |||| |||| ||||||||| |||||||||||| |||||| | ||  |||||||
Sbjct  352  ATATCTTTGAGAATCTCGTTTCATTTTTATTTTATTTCAATTGTTGTGGATATCTTGGAC  411

Query  413  TTTTGATTAAAGTGACGAACACTATATTGTTTTTACGGATTATTGTTTATTTTTGG-CTT  471
            ||||||  |   | |       | |   |||||||||||||| ||||| ||||| | |||
Sbjct  412  TTTTGA--A---T-A-------T-T---GTTTTTACGGATTAGTGTTTTTTTTTTGTCTT  454

Query  472  GTAAGAATATGTTTTGATCTTTGA  495
            ||||||||||||||| ||||||||
Sbjct  455  GTAAGAATATGTTTTAATCTTTGA  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5