BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29035.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484673 jgi|Araly1|484673|fgenesh2_kg.5__665__AT3G29035.1 1317 0.0
> Ahg484673 jgi|Araly1|484673|fgenesh2_kg.5__665__AT3G29035.1
Length=1141
Score = 1317 bits (713), Expect = 0.0
Identities = 960/1075 (89%), Gaps = 34/1075 (3%)
Strand=Plus/Plus
Query 170 CTGAAATGGATTACAAGGTATCAAGAAGTGGGGAGATAGTAGAAGGAGAAGTAGAAGATT 229
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 60 CTGAAATGGATTACAAGGTATCAAGAATTGGGGAGATCGTAGAAGGAGAAGTAGAAGATT 119
Query 230 CAGAAAAGATTGATTTACCACCTGGTTTCAGATTTCACCCAACTGATGAAGAACTTATAA 289
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAGAGAAGATTGATTTGCCACCTGGTTTCAGATTTCACCCAACTGATGAAGAACTTATAA 179
Query 290 CACACTATCTAAGACCAAAGGTTGTAAACTCTTTTTTCTCTGCTATAGCTATTGGTGAAG 349
| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 180 CTCACTATCTAAGACCAAAGGTTCTAAACACTTTTTTTTCTGCTATAGCTATTGGTGAAG 239
Query 350 TTGATCTCAACAAAGTCGAGCCTTGGGACTTGCCTTGGAAGGCTAAGCTTGGGGAAAAAG 409
||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 240 TTGATCTCAACAAGGTCGAGCCATGGGACTTGCCTTGGAAGGCTAAGATAGGGGAAAAAG 299
Query 410 AGTGGTACTTCTTTTGCGTAAGAGACCGAAAATACCCGACTGGTTTAAGAACGAATCGTG 469
|||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |
Sbjct 300 AGTGGTACTTCTTTTGCGTACGAGACCGGAAATACCCGACCGGTTTAAGGACGAATCGGG 359
Query 470 CTACTAAAGCCGGTTATTGGAAAGCTACAGGGAAAGATAAAGAGATCTTCAAAGGGAAAT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTACTAAAGCCGGTTATTGGAAAGCTACAGGGAAAGATAAAGAGATCTTCAAAGGGAAAT 419
Query 530 CTCTTGTTGGTATGAAGAAAACATTGGTTTTCTACAAAGGAAGAGCTCCTAAAGGAGTAA 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCTTGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCTCCTAAAGGAGTAA 479
Query 590 AAACAAATTGGGTCATGCATGAGTATCGATTAGAAGGCAAAT-TCGCTATCGATAATCTC 648
|||| ||||||||||||||||| ||||| ||||||||||||| | || ||||||||||||
Sbjct 480 AAACCAATTGGGTCATGCATGAATATCGCTTAGAAGGCAAATAT-GCCATCGATAATCTC 538
Query 649 TCTAAAACCGCTAAGAACGAATGTGTTATTAGTCGTGTTTTTCATACACGGACTGATGGT 708
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 539 CCTAAAACCGCTAAGAACGAATGTGTTATTAGTCGTGTTTTTCATAAACGGGCAGATGGT 598
Query 709 ACGAAGGAGCATATGTCCGTTGGTTTACCTCCGCTGATGGATTCTTCTCCATATCTAAAG 768
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGAAGGCGCATATGTCCGTCGGTTTACCTCCGCTGATGGATTCTTCTCCATATCTAAAG 658
Query 769 AGTAGAGGACAAGACTCTTTAGCCGGGACCACCCTTGGTGGGTTGTTGTCTCACGTTACC 828
|||||||||| ||||||||| ||||| |||||||||||||| ||||| ||| || | |||
Sbjct 659 AGTAGAGGACGAGACTCTTTTGCCGGAACCACCCTTGGTGGTTTGTTTTCTAACATGACC 718
Query 829 TACTTC-TCCGACCAAACAACCGATGACAAGAGTCTTGTGGCCGATTTTAAA-AC--T-- 882
|||| || ||| |||||||||| |||||||||||||||||||| |||||| || |
Sbjct 719 GGCTTCCTC-GACAAAACAACCGACGACAAGAGTCTTGTGGCCGAGTTTAAAGACGATTT 777
Query 883 -A------CCATGTTTGGTTCCGGATCGACTAACTTTTTACCAAACAT-AGGTTCTCTAC 934
| ||||||| ||||| | ||| |||||||| |||||||||| || |||||| |
Sbjct 778 TAAAAATACCATGTTCGGTTCTGCATCAACTAACTTGATACCAAACATTAG-TTCTCTGC 836
Query 935 TAGACT-TCGATCCTCTGTTTCTACAAAACAATTCTTC-AGTACTGAAGATGTTGCTTGA 992
|||||| | | |||||||||||| ||| |||||||||| | |||||||||||||||||||
Sbjct 837 TAGACTATGG-TCCTCTGTTTCTGCAAGACAATTCTTCCA-TACTGAAGATGTTGCTTGA 894
Query 993 CAATGAAGAAACCCAATTTAAGAAGAATCTTCACAATTCAGGTTCATCAGAGAGTGAACT 1052
|| ||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||| |
Sbjct 895 CAGTGAAGAAACCCAATTCAAGAAGAATCTTCAGAATTCTGGTTCCTCGGAGAGTGAATT 954
Query 1053 AACAGCGAGTTCTTGGCAAGGTCACAATTCTTATGGTTCCACTGGTCCAGTGAATCTTGA 1112
||| |||||||||| ||| |||||| || ||| || ||| ||||| ||||||||||||||
Sbjct 955 AACCGCGAGTTCTTTGCACGGTCACGATCCTTGTGCTTCAACTGGACCAGTGAATCTTGA 1014
Query 1113 TTGCGTTTGGAAATTCTGAATTTGGAAAATCGAAAATTTGGATGTTAAC-TAGGGGGTAT 1171
||| |||||||| |||||| |||||||| | ||| ||| ||| | || |||| |||||
Sbjct 1015 TTGTGTTTGGAATTTCTGATTTTGGAAATTGGAACATTGGGA-GAAAAAATAGGAGGTAT 1073
Query 1172 ATAGGGTTTTTAAAAACAGTGTATATATGCGTTATGTGTTAGCTTTAGATTCTAG 1226
||||| ||| || |||| |||| || ||||||||| |||||||| |||||
Sbjct 1074 ATAGG-TTT--AA---CAGT--ATATGTG--TTATGTGTTTGCTTTAGAATCTAG 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5