BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29040.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896853 jgi|Araly1|896853|Al_scaffold_0005_819 1033 0.0
Ahg479716 jgi|Araly1|479716|fgenesh2_kg.3__2417__AT3G21970.1 625 2e-178
> Ahg896853 jgi|Araly1|896853|Al_scaffold_0005_819
Length=765
Score = 1033 bits (559), Expect = 0.0
Identities = 703/772 (91%), Gaps = 11/772 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCAAATATATTGGCCATGGTGGCCATGCAACTCCTCCTTATACGCATAGTTTCT 60
|||| |||||||||||||||| ||||||| || ||| ||||||||||||| ||||||
Sbjct 1 ATGTTTTCAAATATATTGGCCGTGGTGGCTATACAA---CTCCTTATACGCAGCGTTTCT 57
Query 61 TCCCAAAACGTTACGAATGAGTATTTGAACCACCAATGCAACAACACACAAGGGACATAC 120
|| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 58 TCTCAGAACGTTACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGACCTAC 117
Query 121 ACGCGGGGTAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCGTAACATCTCTCACCTC 180
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 118 ACGCGGGGGAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCATAACATCTCCCACCTT 177
Query 181 CATCTTCGCTACGGTTACACCTAC-AACTCCAATGTTGAGGCTTACGAAGTTAGTAAAGA 239
||||||||| |||||||||||||| || |||||||||| |||||| ||||||||||| ||
Sbjct 178 CATCTTCGCAACGGTTACACCTACGAA-TCCAATGTTGTGGCTTATGAAGTTAGTAAGGA 236
Query 240 TCCCAACATTGTCTTCGTTTTGCTCCAGTGTCGTGGTGACTCTTACGGGTCCAAGTGCCA 299
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 237 TCCCAACATTGTCTTCGTTTTGCTCCAGTGCCGTGGTGACTCGTACGGGTCTAAGTGCCA 296
Query 300 CTCCTGCCTCCACACAGCCTTCTCTGGGCTTCGTGAGAGATGTCGGGGAAACAAAGGAGC 359
|||||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 297 CTCCTGCCTCCATACAGCCCTCTCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGC 356
Query 360 AATAATATGGTACGACCAATGTGTTTTGGAGATTTCTTCCGTGAATACCAAGGGGAGGAT 419
|||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 357 AATAATATGGTACGACCAGTGTGTTTTGGAGATTTCTTCAATTAATACCAAGGGGAGGAT 416
Query 420 TCGTTACGATAGTTTTTTCAATATGACCAACGTGAAGAATGTGAGCAGCAATGCGGAGCA 479
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 417 TCGTTACGATAGTTTTTTCAATATGACCAACCTGAAGAATGTGAGTAGCGATGCGGAGCA 476
Query 480 GTTTAAAAATAAAAGGAAGGATCTCTTCCACAAGCTATTGTTGGGAGCCACCAAGGATGT 539
|||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||
Sbjct 477 GTTTAAAAATAAAAGGAAAGATCTCTTCAACAAGCTATTGGTAAAAGCCACTAAGGATGT 536
Query 540 AAGCGACA-GCAATGAT-GCGTACGCAGTGGGGGAGACGAGGATAGGAAGAAATAAGATG 597
|||||| | | |||| | | |||||||||||| |||||||||||||| ||||||||| ||
Sbjct 537 AAGCGAAAAG-AATGGTTG-GTACGCAGTGGGTGAGACGAGGATAGGGAGAAATAAGTTG 594
Query 598 TATGCAATGATGCAGTGTGCACTAGACTTAACGACGAATGGATGCTATGTGTGTCTAGAA 657
|||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||
Sbjct 595 TATGCAATGATGCAGTGTGCGCTAGACTTAACGCCGAACGGTTGCTATGTGTGTCTAGAA 654
Query 658 TGGATTATAGGCAGGTATGATAGCTT-CTACTTTGACCGTAGACAAGGAACGAGAGTTTT 716
||||||| || ||||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct 655 TGGATTACCGGTAGGTATGATAG-TTACTACTTCGACCGTAGACAAGGAGGGAGAGTTTT 713
Query 717 GAGTAGGAGTTGTAGCTTAAGATATGAGCTTTACCCTTTTCTTAGGAGGTAA 768
| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 714 GGGTAGGAGTTGTAGCTTAAGGTATGAGCTTTACCCTTTTCTTAGAAGGTAA 765
> Ahg479716 jgi|Araly1|479716|fgenesh2_kg.3__2417__AT3G21970.1
Length=909
Score = 625 bits (338), Expect = 2e-178
Identities = 639/780 (82%), Gaps = 37/780 (5%)
Strand=Plus/Plus
Query 12 TATATTGGCCATGGTGGCCATGCAACTCCTCCTTATACGC-ATAGTTTCTTCCCAAAACG 70
||| |||| | ||||||| || ||||| |||||| ||| | || ||||||||||| ||||
Sbjct 30 TATCTTGGTCGTGGTGGCTATACAACTTCTCCTTTTACACAAT-GTTTCTTCCCAGAACG 88
Query 71 TTACGAATGAGTATTTGAACCACCAATGCAACAACACACAAGGGACATACACGCG-GGGT 129
|||| |||||||||||||||||||||||||||||||| ||||||| |||||| | |||
Sbjct 89 TTACCAATGAGTATTTGAACCACCAATGCAACAACACCCAAGGGAAATACACTCATGGG- 147
Query 130 AGTACGTTTGAGAAGAATCTCAACCAAGTCATCCGTAACATCTCTCACCTCCATCTTCGC 189
|||||||| |||||||| |||||||||||| ||| |||||||||| ||||| ||||| |
Sbjct 148 AGTACGTTCGAGAAGAACCTCAACCAAGTCCTCCATAACATCTCTGACCTCGATCTTAGA 207
Query 190 TACGGTTACACCTACAACTCCAATGTTGAGGCTTACGAAGTTAGTAAAGATCCCAACATT 249
||||||||| |||||| ||||||||||| ||||||| ||||||| || ||||||||||||
Sbjct 208 TACGGTTACGCCTACATCTCCAATGTTGTGGCTTACAAAGTTAGCAAGGATCCCAACATT 267
Query 250 GTCTTCGTTTTGCTCCAGTGTCGTGGTGACTC-TTACGGGTCCAAGTGCCACTCCTGCCT 308
||||| |||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 268 GTCTTTGTTTTGCTCCAGTGCCGCGGTGACTCCTTT-GGGTCCAAGTGCCACTCCTGCCT 326
Query 309 CCAC-ACAGCC-TTCTCTGGGCTTCGTGAGAGATGTCGGGGAAACAAAGGAGCAATAATA 366
| |||||| || |||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 327 T-AGGACAGCCGTT-TCTGGGCTTCGTGAGAGATGTCCGGGAAACAGAGGAGCAACAATA 384
Query 367 TGGTACGACCAATGTGTTTTGGAGATTTCTTCCGTGAATACCAAGGGGAGGATTCGTTAC 426
||||||||||||||| |||||||||||||||| ||| || | |||||||||| | ||||
Sbjct 385 TGGTACGACCAATGTCTTTTGGAGATTTCTTCGGTGGATTCTGAGGGGAGGATCCATTAC 444
Query 427 GATAGTTTTTTCAATATGACCAA-CGTGAAGAATGTGAGCAGCAATGCGGAGCAGTTTAA 485
| ||| | ||| ||||| | || | ||||| || | || | || | ||| ||| |
Sbjct 445 AAAAGTATGTTCTATATG-CAAAACCCAAAGAACGTCACCAACGATCCCAAGCGGTTCGA 503
Query 486 AAATAAAAGGAAGGATCTCTTCCACAAGCTATTGTTGGGAGCCACCAAGGAT-GTAAGCG 544
| ||||||||| ||||||| ||||||||||| || ||| ||||||||||||| | ||| |
Sbjct 504 AGATAAAAGGAGGGATCTCCTCCACAAGCTAATGCTGGAAGCCACCAAGGATAGCAAG-G 562
Query 545 ACA--GC----AATG-A-TGC-GTACGCAGTGGGGGAGACGAGGATAGGAAGAAATAAGA 595
| | || || | | || ||| |||||||| |||| |||||| || ||||||||||
Sbjct 563 AAAATGCCGCCAAGGGACTGTTGTATGCAGTGGGTGAGATGAGGATTGGCAGAAATAAGA 622
Query 596 TGTATGCAATGATGCAGTGTGCACTAGACTTAACG-ACGAATGGATGCTATGTGTGTCTA 654
|||||||| || |||||||| | | ||||||| | | || ||| ||| |||||||||||
Sbjct 623 TGTATGCAGTGGTGCAGTGTACGCAAGACTTATGGCA-GACTGGTTGCCATGTGTGTCTA 681
Query 655 GAATGGATTATAGGCAGGTATGA--TA-GCTTC-TACTT-TGACCGTAGACAAGGAACGA 709
|||||||| | | ||| |||| || | ||||| | |||||| || |||| ||
Sbjct 682 GAATGGATCAC-G-CAG--ATGAAATATGGAGAGTACTTCT-ACCGTAAACCAGGAGGGA 736
Query 710 GAGTTT-TGAGTAGGAGTTGTAGCTTAAGATATGAGCTTTACCCTTTTCTTAGGAGGTAA 768
| |||| || |||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 737 GGGTTTATG-GTAGGAGTTGTAGCTTTAGGTATGAGCTTTACCCTTTTCTTAGTAGGTAA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5