BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29050.1 Length=723 Score E Sequences producing significant alignments: (Bits) Value Ahg322981 jgi|Araly1|322981|fgenesh1_pm.C_scaffold_5000525 630 3e-180 Ahg930164 jgi|Araly1|930164|scaffold_302621.1 143 2e-33 > Ahg322981 jgi|Araly1|322981|fgenesh1_pm.C_scaffold_5000525 Length=870 Score = 630 bits (341), Expect = 3e-180 Identities = 399/427 (93%), Gaps = 3/427 (1%) Strand=Plus/Plus Query 297 AGGGAAGATCAATTACGATGACAATATCTGTATTGATACCGCAAGGGCAAGGCCGAATGC 356 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 447 AGGGAAGATCAATTATGATGACAATTTCTGTATTGATACCGCAAGGGCAAGGCCGAATGC 506 Query 357 GAAAACTCATACCGGTGATGATTCAGTTTTGGAGTTTTTGAGACTCTTCGAAAATCTGAC 416 ||||||||||||| ||||||| |||||| |||||||||| ||| |||| |||||||| Sbjct 507 GAAAACTCATACCCGTGATGA---AGTTTTAGAGTTTTTGACTCTCATCGATAATCTGAC 563 Query 417 AAATATAGCCGTCACTAAAAGAAATAACTTCGTAAAAGATGTGGAGAAACCGGCACTATA 476 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 564 AAATATAGCCGTCACTAAAAGAAATAATTTCGTAAAAGATGTGGAGAAACCGGCACTATA 623 Query 477 TGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGCA 536 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 624 TGCGGCAGGAGAGAAGAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGAA 683 Query 537 TGACTTAACTCCTAGGGCTTGTGTGGAGTGTGTGAATCATAATGTCCGGCAATTTCAAGA 596 ||||||||||||| |||||||||||||||||||| ||| |||||| |||||||| | Sbjct 684 GGACTTAACTCCTAAGGCTTGTGTGGAGTGTGTGAGTCACAATGTCATAAAATTTCAAAA 743 Query 597 TTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCTAGAGTTTTGGGTAGGAGCTG 656 |||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 744 TTGCTATGAAAATAAACCAGTAGGTTTGAAAATAGGTGGAAGAGTTTTCGGTAGGAGCTG 803 Query 657 TAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAA 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAA 863 Query 717 GTTCTAA 723 ||||||| Sbjct 864 GTTCTAA 870 > Ahg930164 jgi|Araly1|930164|scaffold_302621.1 Length=745 Score = 143 bits (77), Expect = 2e-33 Identities = 198/252 (79%), Gaps = 25/252 (10%) Strand=Plus/Plus Query 461 AGAAACCGGCACTATATGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAA 520 |||| ||||| || |||||||| || ||||| ||| | || || |||||| | || |||| Sbjct 490 AGAAGCCGGCGCTGTATGCGGCTGGGGAGAAGAGGCTGGGGAAGAAGAAGTTGTACGTAA 549 Query 521 TGGTTCAGTGTACGCATGACTTAACTCCT-AGGGCTTGTGTGGAGTGTGTG-AATCATAA 578 |||| ||||||| || ||||||| || | |||| ||||| ||||||| || | ||||| Sbjct 550 TGGTGCAGTGTATGCTTGACTTATCTGATAAGGG-TTGTGAGGAGTGTATGTCA-CATAA 607 Query 579 TGTCCG-GCAATT-TCAAGATTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCT 636 ||| || || ||| |||||||||| | ||||| || | ||| |||| ||| Sbjct 608 TGT-CGTGC-ATTATCAAGATTGC--T----ATAAA-CA--A------AAACAAGGAGCT 650 Query 637 AGAGTTTTGGGTAGGAGCTGTAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCC-AA 695 |||||||| |||||||||||||||||||||||||||| ||||||||||||| || | || Sbjct 651 AGAGTTTTAGGTAGGAGCTGTAACTTTAGGTTTGAGCTTTACCCTTTTGTTGAC-CAGAA 709 Query 696 GACCAGTCCTAA 707 || ||||||||| Sbjct 710 GAGCAGTCCTAA 721 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26609796066 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5