BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29050.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322981 jgi|Araly1|322981|fgenesh1_pm.C_scaffold_5000525 630 3e-180
Ahg930164 jgi|Araly1|930164|scaffold_302621.1 143 2e-33
> Ahg322981 jgi|Araly1|322981|fgenesh1_pm.C_scaffold_5000525
Length=870
Score = 630 bits (341), Expect = 3e-180
Identities = 399/427 (93%), Gaps = 3/427 (1%)
Strand=Plus/Plus
Query 297 AGGGAAGATCAATTACGATGACAATATCTGTATTGATACCGCAAGGGCAAGGCCGAATGC 356
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 447 AGGGAAGATCAATTATGATGACAATTTCTGTATTGATACCGCAAGGGCAAGGCCGAATGC 506
Query 357 GAAAACTCATACCGGTGATGATTCAGTTTTGGAGTTTTTGAGACTCTTCGAAAATCTGAC 416
||||||||||||| ||||||| |||||| |||||||||| ||| |||| ||||||||
Sbjct 507 GAAAACTCATACCCGTGATGA---AGTTTTAGAGTTTTTGACTCTCATCGATAATCTGAC 563
Query 417 AAATATAGCCGTCACTAAAAGAAATAACTTCGTAAAAGATGTGGAGAAACCGGCACTATA 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 564 AAATATAGCCGTCACTAAAAGAAATAATTTCGTAAAAGATGTGGAGAAACCGGCACTATA 623
Query 477 TGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGCA 536
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 624 TGCGGCAGGAGAGAAGAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGAA 683
Query 537 TGACTTAACTCCTAGGGCTTGTGTGGAGTGTGTGAATCATAATGTCCGGCAATTTCAAGA 596
||||||||||||| |||||||||||||||||||| ||| |||||| |||||||| |
Sbjct 684 GGACTTAACTCCTAAGGCTTGTGTGGAGTGTGTGAGTCACAATGTCATAAAATTTCAAAA 743
Query 597 TTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCTAGAGTTTTGGGTAGGAGCTG 656
|||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 744 TTGCTATGAAAATAAACCAGTAGGTTTGAAAATAGGTGGAAGAGTTTTCGGTAGGAGCTG 803
Query 657 TAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAA 863
Query 717 GTTCTAA 723
|||||||
Sbjct 864 GTTCTAA 870
> Ahg930164 jgi|Araly1|930164|scaffold_302621.1
Length=745
Score = 143 bits (77), Expect = 2e-33
Identities = 198/252 (79%), Gaps = 25/252 (10%)
Strand=Plus/Plus
Query 461 AGAAACCGGCACTATATGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAA 520
|||| ||||| || |||||||| || ||||| ||| | || || |||||| | || ||||
Sbjct 490 AGAAGCCGGCGCTGTATGCGGCTGGGGAGAAGAGGCTGGGGAAGAAGAAGTTGTACGTAA 549
Query 521 TGGTTCAGTGTACGCATGACTTAACTCCT-AGGGCTTGTGTGGAGTGTGTG-AATCATAA 578
|||| ||||||| || ||||||| || | |||| ||||| ||||||| || | |||||
Sbjct 550 TGGTGCAGTGTATGCTTGACTTATCTGATAAGGG-TTGTGAGGAGTGTATGTCA-CATAA 607
Query 579 TGTCCG-GCAATT-TCAAGATTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCT 636
||| || || ||| |||||||||| | ||||| || | ||| |||| |||
Sbjct 608 TGT-CGTGC-ATTATCAAGATTGC--T----ATAAA-CA--A------AAACAAGGAGCT 650
Query 637 AGAGTTTTGGGTAGGAGCTGTAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCC-AA 695
|||||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||
Sbjct 651 AGAGTTTTAGGTAGGAGCTGTAACTTTAGGTTTGAGCTTTACCCTTTTGTTGAC-CAGAA 709
Query 696 GACCAGTCCTAA 707
|| |||||||||
Sbjct 710 GAGCAGTCCTAA 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5