BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29070.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484678 jgi|Araly1|484678|fgenesh2_kg.5__670__AT3G29070.1 1096 0.0
> Ahg484678 jgi|Araly1|484678|fgenesh2_kg.5__670__AT3G29070.1
Length=688
Score = 1096 bits (593), Expect = 0.0
Identities = 664/697 (95%), Gaps = 9/697 (1%)
Strand=Plus/Plus
Query 45 TTGTTGCTGAAACTAGAAGATGGATTTGCTACCATCAAGATATAAGATTCACAAGACAAA 104
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTGTTGTTGAAACTAGAAGATGGATTTGCTACCATCAAAATATAAGATTCACAAGACAAA 60
Query 105 GTTAAGATGGATCTTAACAatgatgacgatgatgatgatgatggtgatgaGAAGAGGAGA 164
|||||||||||||||||||| |||||| ||||||||||| | | |||||||||||
Sbjct 61 GTTAAGATGGATCTTAACAACGATGAC---GATGATGATGA---T--T-AGAAGAGGAGA 111
Query 165 ATCAATGAGATTAGATATGGAATCAGGTAACACAAAATGTATCTCCGATGACATCAAAAC 224
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 112 ATCAATGAGATTAGATATGGAATCAGGTACCTCAAAATGTATCTCCGATGACATCAAAAC 171
Query 225 AAATTACATGACCGTTGGGACTTATTCCATCGTCAATCCCAACGAAGGCCACCATCTTCC 284
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 172 AAATTACATGACCGTTGGGACTTATTCCATCGTCAATCCTAACGAAGGCCACCATCTTCC 231
Query 285 TCCTTCTCACAAACTCTTCGTCACTGTGTCATCTCCTAAAGGGAAAAGCCATCATCATGC 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GCCTTCTCACAAACTCTTCGTCACTGTGTCATCTCCTAAAGGGAAAAGCCATCATCATGC 291
Query 345 AGAGAATGTAGAGTCCGGGAAATTCGTGTTCACGGCAGAAGAAACCGGCGATTACATGAC 404
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 292 AGAGAATGTAGAGTCCGGGAAATTCGTGTTCACGGCAGATGAAACCGGCGATTACATGAC 351
Query 405 GTGTTTTGTGGCTCCAGGTTATAGACCTACCGCAAAATTCGCGGTTGATTTCGAGTGGAA 464
|||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||
Sbjct 352 GTGTTTTGTGGCTCCAGGTTATAGACCTACGGCGAGATTCGCGGTTGATTTCGAATGGAA 411
Query 465 AAGCGGTGTAGAGGCTAAAGATTGGACCACTATAGCCAAGAGAGGCCAAATAACCATGCT 524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 412 AAGCGGTGTAGAGGCTAAAGATTGGACCACTATCGCCAAGAGAGGCCAAATAACCATGCT 471
Query 525 AGAGGTGGAGGTGAGGAAACTACTCGACGTGACAGAAACTATACATGAAGAAATGTTTCA 584
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 472 GGAGGTGGAGGTGAGGAAATTACTCGACGTGACCGAAACTATACATGACGAAATGTTTCA 531
Query 585 GCTCATAGAGAGGGAAAGGGAAATGCAAGAGTTAAACCGATCAACGAATTCAAGAATGGC 644
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GCTCAGGGAGAGGGAACGGGAAATGCAAGAGTTAAACCGATCAACGAATTCAAGAATGGC 591
Query 645 AGCTCTCAGTTTACTGTCGTTCGTGGTAACAATGTCGGTCGCGGGTTTACAACTACGGCA 704
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 592 AGCTCTCAGCTTATTGTCGTTTGTGGTAACAATGTCGGTCGCGGGTTTACAACTATGGCA 651
Query 705 CCTCAAGTCATTCTTGGAGAGGAAGAAGCTCCTCTGA 741
|||||||||||||||||||||||||||||||||||||
Sbjct 652 CCTCAAGTCATTCTTGGAGAGGAAGAAGCTCCTCTGA 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5