BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29090.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936712 jgi|Araly1|936712|scaffold_500903.1 1500 0.0
> Ahg936712 jgi|Araly1|936712|scaffold_500903.1
Length=995
Score = 1500 bits (812), Expect = 0.0
Identities = 935/995 (94%), Gaps = 5/995 (1%)
Strand=Plus/Plus
Query 85 ACTAGGGTTTTACAACTATGGCAACGACTCGAATGGTTAGGGTTTCGCAAGATGGTTCGG 144
||||||| ||||||| |||||| ||||||||||| || |||||| ||||||||||||| |
Sbjct 5 ACTAGGGGTTTACAAGTATGGCGACGACTCGAATAGTGAGGGTTGCGCAAGATGGTTCCG 64
Query 145 GAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGCAGAA 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 65 GAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGTAGGA 124
Query 205 CTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCTGTGTATGTACCCAAGAGGAAGA 264
||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 125 CTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCAGTTTACGTACCCAAGAGGAAAA 184
Query 265 ATTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTT-TTGACTTGGAACAATACA 323
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 185 ACTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTTCTT-ACTTGGAACAATACA 243
Query 324 GCTTCCAAGATTGAGCATCACCAGGCGTCTAGAGTCATTGGGACTGGTACGTTTGGTTGT 383
|||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||
Sbjct 244 GCTTCCAAGATTGAGCATCATCAGGCGGCTAGAGTTATTGGGACTGGTACGTTTGGGTGT 303
Query 384 GGTAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCT 443
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGGAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCT 363
Query 444 GCTCCTGAGGGATCAGGGCAAGCTGTGGCGATACGAGTCACTGCAGACCGTTGCGCCTTT 503
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 364 GCTCCTGAGGGATCAGGGCAAGCTGTTGCGATACGAGTCACTGCAGACCGTTGTGCCTTT 423
Query 504 TATAATTGTCGATTTCTCGGTTGGCAGGATACATTGTATTTACATCATGGGAAACAATAT 563
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 424 TATAATTGTCGGTTTCTCGGCTGGCAGGATACATTGTATTTACATCATGGGAAACAATAT 483
Query 564 TTGAAAGACTGTTACATCGAGGGAAGTGTGGATTTCATATTTGGAAACAGTACCGCTCTC 623
||||||||||| ||| |||||||||| ||||||||||||||||||||||| || || |||
Sbjct 484 TTGAAAGACTGCTACGTCGAGGGAAGCGTGGATTTCATATTTGGAAACAGCACTGCACTC 543
Query 624 TTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAA 683
|||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 544 TTGGAACATTGCCATATCCATTGCAAATCTCAGGGTTTTATAACAGCACAAAGCAGAAAA 603
Query 684 TCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGATGTGTGATCACGGGTAATGGTCAG 743
|| ||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 604 TCATCTCAAGAATCTACTGGTTACGTATTCTTAAGATGTGTGATTACAGGTAATGGTCAG 663
Query 744 AGCGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTAGTCCTTGCTTAC 803
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 664 AGTGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTGGTCCTTGCTTAC 723
Query 804 ACTTACATGGACGCGTGTATCAGAAATGTGGGTTGGCATAACTGGGGAAACGCAGAGAAC 863
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 724 ACATACATGGATGCGTGTATCAGAAATGTCGGTTGGCATAACTGGGGAAACGCAGAGAAC 783
Query 864 GAGAGAAGTGCTTGCTTTTATGAGTATAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAA 923
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 784 GAGAGAAGTGCTTGCTTTTATGAGTACAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAA 843
Query 924 CGTGTTCCGTGGTCGAGAGAACTGATGGATGACGAAGCTGGACACTTTGTGCATCATAGT 983
|| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 844 CGGGTTCCGTGGTCGAGAGAACTAATGGATGAAGAAGCCGGACACTTTGTGCATCACAGT 903
Query 984 TTTGTAGATCCTGAACAGGACCGGCCTTGGTTGTGTCTAAGAATGGGTGTGAAAACACCA 1043
||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 904 TTTGTGGATCCAGAACAGGACCGCCCTTGGTTGTGTCTAAGGATGGGTGTGAAAACACCA 963
Query 1044 TATTCGGCTTAGAGTACTGaaaaaaaaTGTTGTAA 1078
||||| || ||||||||||||||| ||||||||
Sbjct 964 TATTCTGCGTAGAGTACTGAAAAA---TGTTGTAA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5