BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29100.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936713 jgi|Araly1|936713|scaffold_500904.1 804 0.0
Ahg494036 jgi|Araly1|494036|fgenesh2_kg.7__3469__AT5G39510.1 521 4e-147
Ahg891767 jgi|Araly1|891767|Al_scaffold_0007_3753 145 1e-33
> Ahg936713 jgi|Araly1|936713|scaffold_500904.1
Length=708
Score = 804 bits (435), Expect = 0.0
Identities = 504/538 (94%), Gaps = 2/538 (0%)
Strand=Plus/Plus
Query 758 GGTTAAGAAAATGGACCTCGAGGCAAGAAACCTTCCACCCAATGTTAAATCCAGTCTCCT 817
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 173 GGTTAAGAAAATGGACCTCGAGGCGAGAAGCCTTCCACCCAATGTTAAATCCAGCCTCCT 232
Query 818 TGTCAAATTAAGGGAATACAAATCTGATCTTAACAATTTCAAGACGGAAGTGAAGAGAAT 877
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 233 TGTCAAATTAAGGGAATACAAATCTGATCTGAACAATTTCAAGACTGAAGTGAAGAGAAT 292
Query 878 CACATCTGGAAACTTAAACGCTACTGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGA 937
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 293 CACATCTGGAAACTTAAATGCTAATGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGA 352
Query 938 CACATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATTTAGG 997
|| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 353 CAAATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGTTGTCAACAGACCGTTTAGG 412
Query 998 CCGAACCACAGACAGAATCAAGGACAGTAGGAGAACGATACTGGAGACAGAAGAGCTTGG 1057
|||||||||||||||||||||||||||| ||||||| || |||||||| |||||| ||||
Sbjct 413 CCGAACCACAGACAGAATCAAGGACAGTCGGAGAACAATGCTGGAGACTGAAGAGATTGG 472
Query 1058 TGTTTCAATCCTTCAGGATTTGCACGGGCAGAGACAGTCTCTCTTACGGGCCCATGAAAC 1117
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 473 TGTTTCAATCCTTCAGGATTTGCACGGGCAGAGAGAGTCTCTCTTACGCGCCCATGAAAC 532
Query 1118 GCTTCATGGAGTCGATGATAACGTCGGAAAGAGCAAGAAAATATTGACAACAATGACTAG 1177
|||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||| ||
Sbjct 533 GCTTCATGGAGTTGATGATAACGTGGGAAAGAGCAAGAAAATATTGACTGCGATGACAAG 592
Query 1178 GAGAATGAATAGAAACAAATGGACCATCGGTGCGATAATCACAGTCCTTGTCCTCGCCAT 1237
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 593 GAGGATGAATAGAAACAAATGGACTATCGGTGCGATCATCACAGTCCTTGTCCTCGCTAT 652
Query 1238 TATCTTTATCTTGTACTTCAAACTCACCAGGTGAAGCCTTTTTCTCTTCACCTGCCTG 1295
|||||| ||||| || ||||||||||||||||||||||| | |||||||||| ||||
Sbjct 653 TATCTTGATCTTATATTTCAAACTCACCAGGTGAAGCCTCT--CTCTTCACCTACCTG 708
Score = 189 bits (102), Expect = 5e-47
Identities = 110/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 129 AGTAGTGGTTTCTGGGAACGATGAGTCAAGGTTTCGAAAGATATGAGAGACAATACTGTG 188
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 AGTAGTGGTTTCTGAGAACGATGAGTCAAGTTTTCGAAAGATATGAGCGACAATACTGTG 60
Query 189 AGATTTCTGCAAATCTCTCAAAGAAATGTACTTCAGCTATTGCTCTTGATGGAG 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AGATTTCTGCAAATCTCTCAAAGAAATGTACTTCAGCTAATGCTCTTGATGGAG 114
> Ahg494036 jgi|Araly1|494036|fgenesh2_kg.7__3469__AT5G39510.1
Length=1026
Score = 521 bits (282), Expect = 4e-147
Identities = 445/523 (85%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 760 TTAAGAAAATGGACCTCGAGGCAAGAAACCTTCCACCCAATGTTAAATCCAGTCTCCTTG 819
||| ||||||||| || |||||||| | ||||||||| ||| |||| ||||||||||||
Sbjct 273 TTAGGAAAATGGATCTTGAGGCAAGGAGCCTTCCACCAAATCTTAAGTCCAGTCTCCTTA 332
Query 820 TCAAATTAAGGGAATACAAATCTGATCTTAACAATTTCAAGACGGAAGTGAAGAGAATCA 879
|||||||||| |||| ||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct 333 TCAAATTAAGAGAATTCAAGTCTGATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCA 392
Query 880 CATCTGGAAACTTAAACGCTACTGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGACA 939
|||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 393 CATCTGGACAGTTGAACGCTGCTGCTCGAGATGAGTTGCTAGAAGCTGGTATGGCTGACA 452
Query 940 CATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATTTAGGCC 999
|| |||||||||||||||||||||||||||||||||||||||||| || | | | ||||
Sbjct 453 CAAAGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACTGAGCGTCTCGGCC 512
Query 1000 GAACCACAGACAGAATCAAGGACAGTAGGAGAACGAT-ACTGGAGACAGAAGAGCTTGGT 1058
||||||| |||||| |||||||||| | ||||| || | ||||||| |||||| | |||
Sbjct 513 GAACCACTGACAGAGTCAAGGACAGCCGTAGAACAATGA-TGGAGACTGAAGAGATCGGT 571
Query 1059 GTTTCAATCCTTCAGGATTTGCACGGGCAGAGACAGTCTCTCTTACGGGCCCATGAAACG 1118
||||||||||| || || |||||| | ||||||||||||||| |||| ||||| ||||||
Sbjct 572 GTTTCAATCCTCCAAGACTTGCACAGTCAGAGACAGTCTCTCCTACGCGCCCACGAAACG 631
Query 1119 CTT-CATGGAGTCGATGATAACGTCGGAAAGAGCAAGAAAATATTGACAA-CAATGACTA 1176
|| |||||||| || |||||||| ||||| |||||||| ||||||||| || |||| |
Sbjct 632 -TTGCATGGAGTAGACGATAACGTTGGAAAAAGCAAGAAGATATTGACAGGCA-TGACGA 689
Query 1177 GGAGAATGAATA-GAAACAAATGGACCATCGGTGCGATAATCACAGTCCTTG-TC-CTCG 1233
|||| ||||| | ||| ||||||||| || || || || ||||| | | ||| | | ||
Sbjct 690 GGAGGATGAACAAGAA-CAAATGGACAATTGGAGCTATTATCACTG-CTTTGATTGC-CG 746
Query 1234 CCATTATCTTTATCTTGTACTTCAAACTCACCAGGTGAAGCCT 1276
| |||||| | |||||||||||||||||||||| || ||||||
Sbjct 747 CTATTATCGTCATCTTGTACTTCAAACTCACCAAGT-AAGCCT 788
> Ahg891767 jgi|Araly1|891767|Al_scaffold_0007_3753
Length=633
Score = 145 bits (78), Expect = 1e-33
Identities = 316/423 (75%), Gaps = 48/423 (11%)
Strand=Plus/Plus
Query 764 GAAAATGGA-CCTCG-AGGCAAGAAACCTTCCACCCAATGTTAAATCCAGT-CTCCTTGT 820
||||||||| | | | | ||||| ||||||||||||||| ||||||||| | |||||||
Sbjct 159 GAAAATGGATCAT-GCA-GCAAGTAACCTTCCACCCAATATTAAATCCA-TCCTCCTTGA 215
Query 821 CAAATTAAGGGAATAC-AAATCTGA-TCTTAACA-ATTTCAAGACG-GA-AGTGAAGA-G 874
||||||||||||| | |||||| | ||| || | |||| |||| | || | | |||| |
Sbjct 216 AAAATTAAGGGAAT-CTAAATCT-AGTCTAAAAAGATTT-AAGA-GTGATA-TCAAGAGG 270
Query 875 AATCACATCTGGAAACTTAAACGCTACTGCTCGAGATG-AGTTACTAGAAGCTGGTATGG 933
|| |||||||| |||||| || | |||| ||||||| | |||| || |||||| | |
Sbjct 271 AA-CACATCTGAAAACTTGAATGTTACTACTCGAGAAGAAGTT-CTTGAAGCT-G-A--- 323
Query 934 CTGACACATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATT 993
| | | | ||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 324 ---A-A-A--GGCGGATTCAGCTGATCAAAGATCAAGATTGATGAAATCAACCGAGGGTT 376
Query 994 TAGGC-CGAACCACAGACAGAATCAAGGACAGTAGGAGAACGAT-ACTGGAGACAGAAGA 1051
| ||| ||||| | ||| | ||| ||| | ||| | |||| || | ||||||| ||| |
Sbjct 377 T-GGCTCGAACAAGAGAGATAATTAAGCAGAGTCGAAGAAAAATGA-TGGAGACCGAAAA 434
Query 1052 GC-TTGGTGTTTCAATCCTTC-AGGATTTGCACGGGCAGAGACAGTCTCTCTTACGG-GC 1108
| ||||| ||||||| || | || | ||||| | |||| | |||||||| ||| ||
Sbjct 435 -CATTGGTATTTCAATACT-CGAGAACTTGCAAAGTCAGAAAGAGTCTCTCCAACGCAGC 492
Query 1109 CCATGAAACGCTTCATG-GAGTCGATGATAACGTCGGAAAGAG--CAAGAAAATATTGAC 1165
| || | |||||||| || | ||||| || ||| |||||| | || |||| ||||
Sbjct 493 CAATCTAT-GCTTCATGAGA-TAGATGACAATGTC--AAAGAGTGCCAGTCAATAGTGAC 548
Query 1166 AAC 1168
|||
Sbjct 549 AAC 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5