BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29105.1

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936715 jgi|Araly1|936715|scaffold_500906.1                        435    2e-121


> Ahg936715 jgi|Araly1|936715|scaffold_500906.1
Length=331

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 287/313 (92%), Gaps = 0/313 (0%)
 Strand=Plus/Plus

Query  1    TGGAATTGAAGAAAAAGTCAAGACATGAAGTTTACAACATTAGTTTGCATCACATTTATT  60
            ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct  2    TGGAATTGAAGAAAAAGTCAAGATATGAAGTTTACAACACTAGCTTGCATCACATTTATT  61

Query  61   GTAGTCCTCGTTTCATTTATGGCTCCAATCAATTCAGTGAATCAAGCTTGTAACAAAATT  120
            ||||| | |||||| ||| |||||||  ||||||||||||||| ||||||  ||||||||
Sbjct  62   GTAGTACACGTTTCGTTTCTGGCTCCGGTCAATTCAGTGAATCCAGCTTGCGACAAAATT  121

Query  121  GAGATCACGGGATGTGTACCAGCGATACTTTACGGAGATAAACCAACAACACAATGTTGT  180
            |||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  122  GAGATCACAGGATGTATACCAGCGATACTTTACGGAGATAAACCAACAGCACAATGTTGT  181

Query  181  GAGAAAATGAAAGCACAAGAACCATGttttttttATTTCATTAAGAACCCAGTTTTTAAT  240
            | |||||||||||||||| |||||||||||| | ||||||||||||| || |||||||||
Sbjct  182  GGGAAAATGAAAGCACAACAACCATGTTTTTGTGATTTCATTAAGAATCCTGTTTTTAAT  241

Query  241  AAATATGTCACATCCCCGCAAGCTCGCGCAATCTTAAAATGTTGTGGTATTCCTTATCCT  300
            ||||| ||||| |||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct  242  AAATACGTCACTTCCCCGCAAGCTCGTGCGATCTTAAAATTTTGTGGTATTCCTTATCCT  301

Query  301  ACTTGTTGATGTC  313
            |||||||||||||
Sbjct  302  ACTTGTTGATGTC  314


 Score =  104 bits (56),  Expect = 7e-22
 Identities = 62/65 (95%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  472  AAAATGAAAGCACAAGAACCATGTTTTTGTGATTTCATTAAGAACCCAGTTTTTAATAAA  531
            ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct  185  AAAATGAAAGCACAACAACCATGTTTTTGTGATTTCATTAAGAATCCTGTTTTTAATAAA  244

Query  532  TACGT  536
            |||||
Sbjct  245  TACGT  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19535661568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5