BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29130.2

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936716 jgi|Araly1|936716|scaffold_500907.1                        584    3e-166


> Ahg936716 jgi|Araly1|936716|scaffold_500907.1
Length=401

 Score =  584 bits (316),  Expect = 3e-166
 Identities = 362/384 (94%), Gaps = 4/384 (1%)
 Strand=Plus/Plus

Query  187  AGGTTCATAAGAAGTGTCAGATGGAAGAAACCATAAGAGCAGCTTCACAAGAAGTGTCTA  246
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| 
Sbjct  1    AGGTTCATAAGAAGTGTCTGATGGAAGAAACCATAAGAGCAGCTTCACAAGAAGTTTCTG  60

Query  247  ACGAATTCAAAACTCTTGTTAAAGTAGAAGATTTGAATTCTCTTAGACATTTGCAGCATC  306
            | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct  61   ATGAATTCAAAACTCTTGTTAAAGCAGAAGATCTGAATTCTCTTAGACATTTGCAGCATC  120

Query  307  TCATATTGGGGAGGCTACAGGATAGCAATGCAGTTCTCTCCCATTACAACGAATTTGCAG  366
            |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  121  TCATATTGGGGAGGTTACAGGATAGCAATGCAGTTCTCTCCCATTACAATGAATTTGCAG  180

Query  367  AGAATTGCTTTAG-TGATGTATCATTGGAATTCGCTAGAAGTACCCGTCTTTTGAAGTCG  425
            |||||||| || | ||||||||||||||||||||||||||  |||||||||||||| |||
Sbjct  181  AGAATTGC-TTCGCTGATGTATCATTGGAATTCGCTAGAAACACCCGTCTTTTGAAATCG  239

Query  426  ATGAAAGCAGACCTCGATTACATCTTCTTGAAACTAAGGAGCATTAAAAGTAAGA-TTCT  484
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  240  ATGAAAGCTGACCTTGATTACATCTTCTTGAAACTAAGGAGCATTAAAAGTAAGATTTC-  298

Query  485  GGCTACGTATCCAGACGCATTTCCAGATGATTCTACTAGTGATGCTTTTGATCGACGGCC  544
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  299  GGCTACATATCCAGACGCATTTCCAGATGATTCTACTAGTGATGCTTTTGATCGAAGACC  358

Query  545  CGATCTCGAGTTGCCTCAATAAGC  568
            |||||||||||||||||| |||||
Sbjct  359  CGATCTCGAGTTGCCTCATTAAGC  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31070177355


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5