BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29152.1

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484682 jgi|Araly1|484682|fgenesh2_kg.5__674__AT3G29152.1          374    4e-103


> Ahg484682 jgi|Araly1|484682|fgenesh2_kg.5__674__AT3G29152.1
Length=388

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 341/402 (85%), Gaps = 34/402 (8%)
 Strand=Plus/Plus

Query  7    ACAAAACCCAAATCTCAATTATTCTTAAAAC-----CaaaaaaaaaaaaaCCAATTTGTA  61
            ||||||| |||| ||||||||||||||||||      |||||||||||||  || |||||
Sbjct  3    ACAAAACTCAAACCTCAATTATTCTTAAAACTAAAAAAAAAAAAAAAAAAAAAAATTGTA  62

Query  62   AGACATGAAGTTTACAACATTGACACTGCTCGTGCTGGTGACAGTAATCCAATTGTCTCC  121
            ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct  63   AGACATGAAGTTTACAACATTGACACTGCTCGTGCTGGTGATAGCAATCGAATTGTCTCC  122

Query  122  AACTTTGATCAGAGCCACAATGGTTGAAGGTCCGACCGGAGAT--G----TGACATGCAA  175
            ||| |||||||||||||| ||||||||||||||||||||||||  |    ||||||||||
Sbjct  123  AACGTTGATCAGAGCCACGATGGTTGAAGGTCCGACCGGAGATCAGAAAGTGACATGCAA  182

Query  176  TCCAATGGATGTTATTG-TACCATGTTTGCTACCGTTGACCAACTCTAAAATTCTACCGA  234
            |  | | |||||||| | |||||||||| |||||||| |  | | | ||    |  | ||
Sbjct  183  TGTACTTGATGTTAT-GATACCATGTTTACTACCGTT-A--A-C-C-AA----C--C-GA  228

Query  235  CTCCACATTGCTGTCAA-GTAATG-GTAGAACACCAAACGTGTTTGTGTCAATTCATAAA  292
            |||||||||| |||||| |||||| | ||||||| |||||||||||||||||||||||||
Sbjct  229  CTCCACATTGTTGTCAAAGTAATGAG-AGAACACGAAACGTGTTTGTGTCAATTCATAAA  287

Query  293  AGGCGT-G--TGGTACGT-ACAAGCACTTTTTAATTCTCCAAATGGTCAAAAAACTTGCA  348
            |||||  |  ||||  || |||||||||||| |||||||||||||||||||||||||| |
Sbjct  288  AGGCGGCGAGTGGTG-GTCACAAGCACTTTTCAATTCTCCAAATGGTCAAAAAACTTGTA  346

Query  349  AAGCTTGTAATATTCCTTTTCCTACTTGTTGATCCTCAGGAT  390
            |||||||||||||||||| |||||  |||||| ||||| |||
Sbjct  347  AAGCTTGTAATATTCCTTATCCTAAATGTTGAACCTCATGAT  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15872725024


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5