BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29160.1 Length=2067 Score E Sequences producing significant alignments: (Bits) Value Ahg484683 jgi|Araly1|484683|fgenesh2_kg.5__675__AT3G29160.2 2900 0.0 Ahg317081 jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097 856 0.0 Ahg330549 jgi|Araly1|330549|fgenesh1_pm.C_scaffold_7002776 91.6 2e-17 > Ahg484683 jgi|Araly1|484683|fgenesh2_kg.5__675__AT3G29160.2 Length=1875 Score = 2900 bits (1570), Expect = 0.0 Identities = 1701/1764 (96%), Gaps = 10/1764 (1%) Strand=Plus/Plus Query 258 GAAATGGATCATTCATCAAATAGATTTGGCAATAATGGAGTGGAATCGATTTTACCGAAT 317 |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 115 GAAATGGATCATTCTTCGAATAGATTTGGGAATAATGGAGTGGAATCGATTTTACCGAAT 174 Query 318 TACAAGCTTGGTAAAACTCTTGGAATTGGGTCTTTTGGGAAGGTGAAAATAGCAGAGCAT 377 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 175 TACAAGCTTGGTAAAACTCTTGGAATTGGATCTTTTGGGAAGGTGAAAATAGCAGAGCAT 234 Query 378 GTTGTCACAGGGCATAAGGTTGCTATCAAAATCCTTAATCGTCGTAAGATCAAGAACATG 437 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 235 GTTGTCACAGGGCATAAGGTTGCTATCAAAATCCTCAATCGTCGTAAGATCAAGAATATG 294 Query 438 GAGATGGAAGAGAAAGTGAGGAGGGAGATTAAGATTCTACGGTTGTTTATGCATCCTCAT 497 || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 295 GAAATGGAAGAGAAAGTGAGAAGGGAGATTAAGATTCTACGCTTGTTTATGCATCCTCAT 354 Query 498 ATTATTCGGCAGTATGAGGTAATAGAGACCACGAGTGACATTTATGTTGTGATGGAGTAT 557 ||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct 355 ATTATTCGGCAATATGAGGTAATAGAGACCCCAAGTGACATTTATGTTGTCATGGAGTAT 414 Query 558 GTCAAGTCTGGAGAGCTCTTTGATTATATTGTTGAGAAAGGCAGATTACAAGAAGATGAG 617 || ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 415 GTAAAGTCCGGAGAGCTCTTTGATTATATTGTTGAGAAAGGCAGATTGCAAGAGGATGAG 474 Query 618 GCTCGTAACTTTTTCCAGCAGATAATATCTGGTGTAGAGTACTGCCATCGTAATATGGTT 677 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 475 GCTCGTAACTTTTTCCAGCAGATAATATCTGGTGTAGAGTATTGCCATCGTAATATGGTT 534 Query 678 GTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGATTCGAGGTGTAATATTAAGATT 737 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 535 GTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGATTCGAGGTGCAACATTAAGATT 594 Query 738 GCAGACTTTGGGTTGAGTAATGTTATGCGGGATGGTCATTTTCTAAAGACGAGTTGTGGA 797 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 GCAGACTTTGGGCTGAGTAATGTTATGCGGGATGGTCATTTTCTAAAGACGAGTTGTGGA 654 Query 798 AGCCCCAACTACGCTGCTCCCGAGGTTATATCAGGTAAATTATATGCTGGACCTGAAGTA 857 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 655 AGTCCCAACTACGCTGCTCCTGAGGTTATATCAGGTAAATTATATGCTGGACCTGAAGTA 714 Query 858 GATGTATGGAGTTGCGGAGTTATATTGTACGCTCTATTATGCGGTACTCTTCCTTTTGAT 917 |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| Sbjct 715 GATGTATGGAGTTGCGGAGTGATATTGTACGCTCTATTATGTGGTACTCTTCCATTTGAT 774 Query 918 GATGAAAACATTCCCAACCTTTTCAAGAAAATTAAGGGTGGGATTTACACTCTTCCAAGT 977 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 775 GATGAAAACATTCCCAACCTTTTCAAGAAAATAAAGGGTGGGATTTACACTCTTCCTAGT 834 Query 978 CATTTATCATCTGAGGCTAGAGACCTGATCCCAAGGATGCTTATAGTTGACCCGGTGAAA 1037 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 835 CATTTATCATCTGAGGCTAGAGACCTGATCCCAAGGATGCTTATAGTTGACCCAGTGAAA 894 Query 1038 CGAATCACCATTCCTGAGATCCGTCAACACCGTTGGTTCCAGACTCATCTCCCTCGTTAT 1097 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 CGGATCACCATTCCTGAGATCCGTCAACACCGTTGGTTCCAGACTCATCTCCCTCGTTAT 954 Query 1098 CTTGCTGTCTCTCCACCGGATACAGTAGAGCAGGCTAAAAAGATCAATGAGGAGATAGTT 1157 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 955 CTTGCTGTTTCTCCACCAGATACAGTAGAGCAGGCTAAAAAGATCAATGAGGAGATAATT 1014 Query 1158 CAAGAAGTGGTTAACATGGGATTTGATAGAAACCAGGTTTTGGAATCTCTACGCAACAGA 1217 |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 1015 CAAGAAGTGGTTAACATGGGATTTGACAGAAACCAAGTTTTGGAATCTCTGCGCAACAGA 1074 Query 1218 ACACAAAACGATGCTACTGTTACATACTACCTGTTATTGGATAACCGGTTCCGTGTTCCA 1277 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 ATACAAAACGATGCTACTGTTACATACTACCTGTTATTGGATAACCGGTTCCGTGTTCCA 1134 Query 1278 AGTGGCTATCTAGAATCCGAGTTTCAGGAGACAACAGACAGTGGTTCCAATCCTATGCGC 1337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 AGTGGCTATCTAGAATCCGAGTTTCAGGAGACAACAGACAGTGGTTCCAATCCTATGCGC 1194 Query 1338 ACACCTGAAGCGGGCGCTTCACCTGTAGGCCACTGGATTCCTGCACATGTGGATCACTAC 1397 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1195 ACACCTGAAGCGGGTGCTTCACCTGTAGGCCACTGGGTTCCTGCACATGTGGATCACTAC 1254 Query 1398 GGGTTGGGAGCAAGATCACAAGTCCCTGTTGATCGAAAATGGGCTCTTGGACTTCAGTCT 1457 ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 1255 GGGTTGGGAGCAAGATCACAAGTGCCAGTTGACCGAAAATGGGCTCTTGGACTTCAGTCC 1314 Query 1458 CATGCGCATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTG 1517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 CATGCGCATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTG 1374 Query 1518 TGTTGGAAGAAGATTGGTCACTACAACATGAAATGTCGATGGGTTCCTGGT-TTAGCTGA 1576 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1375 TGTTGGAAGAAGATTGGTCACTACAACATGAAATGTCGATGGGTTCCTGGTATT-GCTGA 1433 Query 1577 TGGTCAGAATACTATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCATTGA 1636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 TGGTCAGAATACTATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCATTGA 1493 Query 1637 GGATGACTGTGCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAAGC 1696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 GGATGACTGTGCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAAGC 1553 Query 1697 CCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTT 1756 || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 1554 TCGCGAAGAGAAGTACTTGCTAGATATCCAGAGAGTTAACGGTCCTCAGTTTCTCTTCTT 1613 Query 1757 GGATCTATGCGCCGCCTTTCTTACAGAGCTTCGTGTGATCTGAATG-TTTTAACCATTT- 1814 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1614 GGATCTATGCGCCGCCTTTCTTACAGAGCTTCGTGTGATCTGAC-GCTTTTAACCATTTT 1672 Query 1815 GTTGAGACAttttttttCTTTCATGTTCAATGGTTTGTAATAGTAGAGAACATAATATAA 1874 ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 GTTCAAACATTTTTTT-CTTTCATGTTCAATGGTTTGTAATAGTAGAGAACATAATATAA 1731 Query 1875 TATGTGGGTGCAGTGTTTACTTTGCCGGGTTACTTTTATATACCTGGATTCTAAGTTAAA 1934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1732 TATGTGGGTGCAGTGTTTACTTTGCCGGGTTACTTTTATATACCTGGATTCTAAGTTAAA 1791 Query 1935 CTCTACTGTAATAGTAACTATCCTTTCTTCTTTTT---GATGGT-TTTTAAGGTTTGATC 1990 |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| Sbjct 1792 CTCTACTGTAATAGTAACTATCATTTCTTCTTTTTTTAGATGGTCTTTTAAGGTTTGATC 1851 Query 1991 ATGTGTACATAACTTAGCTGTTTC 2014 ||||||||||||||||| |||||| Sbjct 1852 ATGTGTACATAACTTAGTTGTTTC 1875 > Ahg317081 jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097 Length=1530 Score = 856 bits (463), Expect = 0.0 Identities = 1187/1528 (78%), Gaps = 84/1528 (5%) Strand=Plus/Plus Query 293 TGGAGTGGAATCGATTTTACCGAATTACAAGCTTGGTAAAACTCTTGGAATTGGGTCTTT 352 ||| || ||||||||| |||| |||||||||||||| | ||||||||| ||||| || || Sbjct 24 TGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTGGTATTGGTTCCTT 83 Query 353 TGGGAAGGTGAAAATAGCAGAGCATG--TTGTCACAGGGCATAAGGTTGCTATCAAAATC 410 ||| | |||||| ||||| ||||| | ||| ||||| ||||| ||||| ||||| ||| Sbjct 84 TGGTAGGGTGAAGATAGCTGAGCACGCATTG--ACAGGACATAAAGTTGCAATCAAGATC 141 Query 411 CTTAATCGTCGTAAGATCAAGAACATGGAGATGGAAGAGAAAGTGAGGAGGGAGATTAAG 470 || |||||||| || |||| ||||||||||||||| |||||||||||||| ||||| || Sbjct 142 CTCAATCGTCGCAAAATCAGGAACATGGAGATGGAGGAGAAAGTGAGGAGAGAGATCAA- 200 Query 471 ATTC-T-ACGGTTGTTTATGCATCCTCATATTATTCGGCAGTATGAGGTAATAGAGAC-C 527 | || | | | | |||||||||||||| || || || | |||||||| |||||||| | Sbjct 201 AATCTTGA-GACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTATAGAGACTC 259 Query 528 ACGAGTGACATTTATGTTGTGATGGAGTATGTCAAGTCTGGAGAGCTCTTTGATTATATT 587 ||| || |||||| |||| ||||||||||| || ||||| ||||| ||||| || ||| Sbjct 260 -CGACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTGACTACATT 318 Query 588 GTTGAGAAAGGCAGATTACAAGAAGATGAGGCTCGTAACTT-TTTCCAGCAGATAATATC 646 || ||||| || ||||| || || |||||||| | ||||| ||| |||||||||||||| Sbjct 319 GTAGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTCTTT-CAGCAGATAATATC 377 Query 647 TGGTGTAGAGTACTGCCATCGTAATATGGTTGTCCATAGAGACCTGAAGCCTGAGAATTT 706 ||| || || ||||||||||| |||||||| || || |||||||| |||||||| || || Sbjct 378 TGGAGTGGAATACTGCCATCGAAATATGGTGGTTCACAGAGACCTCAAGCCTGAAAACTT 437 Query 707 ACTATTGGATTCGAGGTGTAATATTAAGATTGCAGACTTTGGGTTGAGTAATGTTATGCG 766 || |||||||| | || ||| | |||||||| || ||||| |||| ||| | ||||| Sbjct 438 GCTTTTGGATTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAATATAATGCG 497 Query 767 GGATGGTCATTTTCTAAAGACGAGTTGTGGAAGCCCCAACTACGCTGCTCCCGAGGTTAT 826 |||||||||||| | ||||| ||||||||||| || || || || ||||| ||||| || Sbjct 498 AGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCGGCTCCAGAGGTCAT 557 Query 827 ATCAGGTAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGCGGAGTTATATTGTA 886 || || |||||||||||||| |||||||||||||| ||||| || || || ||| | || Sbjct 558 TTCGGGAAAATTATATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTGATACTCTA 617 Query 887 CGCTCTAT-TATGCGGTACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTCAAGA 945 |||||| | | || || |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 618 CGCTCT-TCTCTGTGGGACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTTAAGA 676 Query 946 AAATTAAGGGTGGGATTTACACTCTT-CCAAGTCATTTATCAT-CTGAG-GCTAGAGACC 1002 | || ||||| ||||| || || || || || |||||||| | ||| | |||||||| Sbjct 677 AGATAAAGGGAGGGATATATACA-TTACCTAGCCATTTATC-TGCTG-GTGCTAGAGATT 733 Query 1003 TGATCCCAAGGATGCTTATAGTTGACCCGGTGAAACGAATCACCATTCCTGAGATCCGTC 1062 ||||||| |||||||| |||||||||| |||||||| | ||||| ||||||||||| | Sbjct 734 TGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCCGGC 793 Query 1063 AACACCGTTGGTTCCA-GACTCATCTCCCTCGTTATCTT-GCTGTCTC-TCCACCGGATA 1119 |||||| ||||||||| | |||| || || | ||| || ||||| || ||| || |||| Sbjct 794 AACACCCTTGGTTCCAAG-CTCACCTTCCGAGGTAT-TTAGCTGT-TCCTCCTCCAGATA 850 Query 1120 CAGTAG-AGCAGGCTAAAAAGATCAATGAGGAGATAGTTCAAGAAGTGGTTAACATGGGA 1178 |||| | | ||||| |||||||| | |||||||| | |||||||| | || |||||| Sbjct 851 CAGT-GCAACAGGCGAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGA 909 Query 1179 TTTGATAGAAACCAGGTT-TTGGAATCTCTACGCAACAGAACACAAAACGATG-CTACTG 1236 ||||| |||||||| | ||| ||||||| |||||| | || || || |||| | |||| Sbjct 910 TTTGACAGAAACCACCTCATTG-AATCTCTCCGCAACCGGACCCAGAATGATGGC-ACTG 967 Query 1237 TTACATACTACCTGTTATTGGATAACCGGTTCCGTGT-TCCAAGTGGCTATCTAGAATCC 1295 | |||||||| ||| || |||| || || ||||||| || | |||| ||||| | || Sbjct 968 TGACATACTATCTGATACTGGACAATCGTTTCCGTGCCTCTA-GTGGTTATCTCGGGGCC 1026 Query 1296 GAGTTTCAGGAGACAACAGACAG-TGGTTCCAATCC-TATGCG-CACACCTGAA-GCGGG 1351 |||||||| ||||| | || || | | || || ||||| | || | ||| | | Sbjct 1027 GAGTTTCAAGAGACCATGGA-AGGTACT-CC---CCGTATGCATC-CAGCAGAAAGTGT- 1079 Query 1352 CGCTTCACCTGT-AGGCCA-CTGGATTCCTGCACATG-TGGA-TCA-CTACGG-GTTGGG 1405 |||||||||||| || ||| | || |||| | | || |||| | | | | || ||||| Sbjct 1080 CGCTTCACCTGTTAG-CCATC-GGCTTCCAGGAT-TGATGGAAT-ATCAA-GGAGTTGGC 1134 Query 1406 A-GCAAGATCACAAGT-CCCTGTTGATCGAAAATGGGCTCTTGGACTTCAGTCTCATGCG 1463 | | |||| ||| | ||||||||| ||||||||||||||||||||||||||| || Sbjct 1135 TTG-A-GATCTCAA-TACCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCT 1191 Query 1464 CATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTGTGTTGG 1523 ||||| |||||||| |||| ||||| ||||||| || ||||| | |||||||||||| Sbjct 1192 CATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTGTGTTGG 1251 Query 1524 AAGAAGATTGGTCACTACAACATGAAATGTC-GATGGGTTCCTG---GTTTAGCTG--AT 1577 |||||||| || |||||||||||||| || | ||||||||||| | || || || Sbjct 1252 AAGAAGATAGGGCACTACAACATGAAGTG-CAGATGGGTTCCTAACAGCACAGATGGTAT 1310 Query 1578 GGTCAGAATACT--ATGGTCAACAATCAGCTGC-ACTTCAGAGATGAATCCAGCATCATT 1634 | |||| | ||| ||| || | || ||| | |||| |||| || |||||||| || Sbjct 1311 GCTCAGTA-ACTCGATG--CA-CGAT-AGCAACTACTTTGGAGACGAGTCCAGCATAATA 1365 Query 1635 GAGGATGACTGT-GCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAA 1693 ||| | || || || | | || || | ||| |||| |||||| ||||| | || || Sbjct 1366 GAGAACGA-TGCAGCTGTTAAGTCGCCGAATGTTGTCAAGTTTGAAATTCAGTTGTATAA 1424 Query 1694 AGCCCGGGAAGAGAAGTA-CTTGCTGGATATACAGAGAGTT-AACGGTCCGCAGTTTCTC 1751 | | ||||| || ||||| || |||||| | |||||||| || ||||| ||||| || Sbjct 1425 AACTCGGGACGACAAGTATCTA-CTGGATTTGCAGAGAGTACAA-GGTCCTCAGTT-CTT 1481 Query 1752 -TTCTTGGATCTATGCGCCGCCTTTCTT 1778 ||||||||||| || || || |||||| Sbjct 1482 GTTCTTGGATCTCTGTGCTGCTTTTCTT 1509 > Ahg330549 jgi|Araly1|330549|fgenesh1_pm.C_scaffold_7002776 Length=1476 Score = 91.6 bits (49), Expect = 2e-17 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1666 TCATCAAATTTGAACTTCAGCTATACAAAGCCCGGGAAGAG-AAGTACTTGCTGGATATA 1724 |||||||||||||||||||||||||||||| || |||| | ||||| ||| |||| || Sbjct 1343 TCATCAAATTTGAACTTCAGCTATACAAAGTACGTGAAG-GCAAGTATTTGTTGGACATC 1401 Query 1725 CAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAG 1784 || ||| || | || || |||||| ||||||| ||| |||| | || ||||| | |||| Sbjct 1402 CAAAGAATTGATGGACCTCAGTTTATCTTCTTTGATATATGTGTTGCGTTTCTCAGAGAG 1461 Query 1785 CT 1786 || Sbjct 1462 CT 1463 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77742190045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5