BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29160.1
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484683 jgi|Araly1|484683|fgenesh2_kg.5__675__AT3G29160.2 2900 0.0
Ahg317081 jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097 856 0.0
Ahg330549 jgi|Araly1|330549|fgenesh1_pm.C_scaffold_7002776 91.6 2e-17
> Ahg484683 jgi|Araly1|484683|fgenesh2_kg.5__675__AT3G29160.2
Length=1875
Score = 2900 bits (1570), Expect = 0.0
Identities = 1701/1764 (96%), Gaps = 10/1764 (1%)
Strand=Plus/Plus
Query 258 GAAATGGATCATTCATCAAATAGATTTGGCAATAATGGAGTGGAATCGATTTTACCGAAT 317
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 115 GAAATGGATCATTCTTCGAATAGATTTGGGAATAATGGAGTGGAATCGATTTTACCGAAT 174
Query 318 TACAAGCTTGGTAAAACTCTTGGAATTGGGTCTTTTGGGAAGGTGAAAATAGCAGAGCAT 377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 175 TACAAGCTTGGTAAAACTCTTGGAATTGGATCTTTTGGGAAGGTGAAAATAGCAGAGCAT 234
Query 378 GTTGTCACAGGGCATAAGGTTGCTATCAAAATCCTTAATCGTCGTAAGATCAAGAACATG 437
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 235 GTTGTCACAGGGCATAAGGTTGCTATCAAAATCCTCAATCGTCGTAAGATCAAGAATATG 294
Query 438 GAGATGGAAGAGAAAGTGAGGAGGGAGATTAAGATTCTACGGTTGTTTATGCATCCTCAT 497
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 295 GAAATGGAAGAGAAAGTGAGAAGGGAGATTAAGATTCTACGCTTGTTTATGCATCCTCAT 354
Query 498 ATTATTCGGCAGTATGAGGTAATAGAGACCACGAGTGACATTTATGTTGTGATGGAGTAT 557
||||||||||| |||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 355 ATTATTCGGCAATATGAGGTAATAGAGACCCCAAGTGACATTTATGTTGTCATGGAGTAT 414
Query 558 GTCAAGTCTGGAGAGCTCTTTGATTATATTGTTGAGAAAGGCAGATTACAAGAAGATGAG 617
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 415 GTAAAGTCCGGAGAGCTCTTTGATTATATTGTTGAGAAAGGCAGATTGCAAGAGGATGAG 474
Query 618 GCTCGTAACTTTTTCCAGCAGATAATATCTGGTGTAGAGTACTGCCATCGTAATATGGTT 677
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GCTCGTAACTTTTTCCAGCAGATAATATCTGGTGTAGAGTATTGCCATCGTAATATGGTT 534
Query 678 GTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGATTCGAGGTGTAATATTAAGATT 737
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 535 GTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGATTCGAGGTGCAACATTAAGATT 594
Query 738 GCAGACTTTGGGTTGAGTAATGTTATGCGGGATGGTCATTTTCTAAAGACGAGTTGTGGA 797
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCAGACTTTGGGCTGAGTAATGTTATGCGGGATGGTCATTTTCTAAAGACGAGTTGTGGA 654
Query 798 AGCCCCAACTACGCTGCTCCCGAGGTTATATCAGGTAAATTATATGCTGGACCTGAAGTA 857
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGTCCCAACTACGCTGCTCCTGAGGTTATATCAGGTAAATTATATGCTGGACCTGAAGTA 714
Query 858 GATGTATGGAGTTGCGGAGTTATATTGTACGCTCTATTATGCGGTACTCTTCCTTTTGAT 917
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 715 GATGTATGGAGTTGCGGAGTGATATTGTACGCTCTATTATGTGGTACTCTTCCATTTGAT 774
Query 918 GATGAAAACATTCCCAACCTTTTCAAGAAAATTAAGGGTGGGATTTACACTCTTCCAAGT 977
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 775 GATGAAAACATTCCCAACCTTTTCAAGAAAATAAAGGGTGGGATTTACACTCTTCCTAGT 834
Query 978 CATTTATCATCTGAGGCTAGAGACCTGATCCCAAGGATGCTTATAGTTGACCCGGTGAAA 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CATTTATCATCTGAGGCTAGAGACCTGATCCCAAGGATGCTTATAGTTGACCCAGTGAAA 894
Query 1038 CGAATCACCATTCCTGAGATCCGTCAACACCGTTGGTTCCAGACTCATCTCCCTCGTTAT 1097
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CGGATCACCATTCCTGAGATCCGTCAACACCGTTGGTTCCAGACTCATCTCCCTCGTTAT 954
Query 1098 CTTGCTGTCTCTCCACCGGATACAGTAGAGCAGGCTAAAAAGATCAATGAGGAGATAGTT 1157
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 955 CTTGCTGTTTCTCCACCAGATACAGTAGAGCAGGCTAAAAAGATCAATGAGGAGATAATT 1014
Query 1158 CAAGAAGTGGTTAACATGGGATTTGATAGAAACCAGGTTTTGGAATCTCTACGCAACAGA 1217
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1015 CAAGAAGTGGTTAACATGGGATTTGACAGAAACCAAGTTTTGGAATCTCTGCGCAACAGA 1074
Query 1218 ACACAAAACGATGCTACTGTTACATACTACCTGTTATTGGATAACCGGTTCCGTGTTCCA 1277
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATACAAAACGATGCTACTGTTACATACTACCTGTTATTGGATAACCGGTTCCGTGTTCCA 1134
Query 1278 AGTGGCTATCTAGAATCCGAGTTTCAGGAGACAACAGACAGTGGTTCCAATCCTATGCGC 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGTGGCTATCTAGAATCCGAGTTTCAGGAGACAACAGACAGTGGTTCCAATCCTATGCGC 1194
Query 1338 ACACCTGAAGCGGGCGCTTCACCTGTAGGCCACTGGATTCCTGCACATGTGGATCACTAC 1397
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1195 ACACCTGAAGCGGGTGCTTCACCTGTAGGCCACTGGGTTCCTGCACATGTGGATCACTAC 1254
Query 1398 GGGTTGGGAGCAAGATCACAAGTCCCTGTTGATCGAAAATGGGCTCTTGGACTTCAGTCT 1457
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1255 GGGTTGGGAGCAAGATCACAAGTGCCAGTTGACCGAAAATGGGCTCTTGGACTTCAGTCC 1314
Query 1458 CATGCGCATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTG 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CATGCGCATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTG 1374
Query 1518 TGTTGGAAGAAGATTGGTCACTACAACATGAAATGTCGATGGGTTCCTGGT-TTAGCTGA 1576
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1375 TGTTGGAAGAAGATTGGTCACTACAACATGAAATGTCGATGGGTTCCTGGTATT-GCTGA 1433
Query 1577 TGGTCAGAATACTATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCATTGA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TGGTCAGAATACTATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCATTGA 1493
Query 1637 GGATGACTGTGCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAAGC 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GGATGACTGTGCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAAGC 1553
Query 1697 CCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTT 1756
|| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1554 TCGCGAAGAGAAGTACTTGCTAGATATCCAGAGAGTTAACGGTCCTCAGTTTCTCTTCTT 1613
Query 1757 GGATCTATGCGCCGCCTTTCTTACAGAGCTTCGTGTGATCTGAATG-TTTTAACCATTT- 1814
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1614 GGATCTATGCGCCGCCTTTCTTACAGAGCTTCGTGTGATCTGAC-GCTTTTAACCATTTT 1672
Query 1815 GTTGAGACAttttttttCTTTCATGTTCAATGGTTTGTAATAGTAGAGAACATAATATAA 1874
||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GTTCAAACATTTTTTT-CTTTCATGTTCAATGGTTTGTAATAGTAGAGAACATAATATAA 1731
Query 1875 TATGTGGGTGCAGTGTTTACTTTGCCGGGTTACTTTTATATACCTGGATTCTAAGTTAAA 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TATGTGGGTGCAGTGTTTACTTTGCCGGGTTACTTTTATATACCTGGATTCTAAGTTAAA 1791
Query 1935 CTCTACTGTAATAGTAACTATCCTTTCTTCTTTTT---GATGGT-TTTTAAGGTTTGATC 1990
|||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 1792 CTCTACTGTAATAGTAACTATCATTTCTTCTTTTTTTAGATGGTCTTTTAAGGTTTGATC 1851
Query 1991 ATGTGTACATAACTTAGCTGTTTC 2014
||||||||||||||||| ||||||
Sbjct 1852 ATGTGTACATAACTTAGTTGTTTC 1875
> Ahg317081 jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097
Length=1530
Score = 856 bits (463), Expect = 0.0
Identities = 1187/1528 (78%), Gaps = 84/1528 (5%)
Strand=Plus/Plus
Query 293 TGGAGTGGAATCGATTTTACCGAATTACAAGCTTGGTAAAACTCTTGGAATTGGGTCTTT 352
||| || ||||||||| |||| |||||||||||||| | ||||||||| ||||| || ||
Sbjct 24 TGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTGGTATTGGTTCCTT 83
Query 353 TGGGAAGGTGAAAATAGCAGAGCATG--TTGTCACAGGGCATAAGGTTGCTATCAAAATC 410
||| | |||||| ||||| ||||| | ||| ||||| ||||| ||||| ||||| |||
Sbjct 84 TGGTAGGGTGAAGATAGCTGAGCACGCATTG--ACAGGACATAAAGTTGCAATCAAGATC 141
Query 411 CTTAATCGTCGTAAGATCAAGAACATGGAGATGGAAGAGAAAGTGAGGAGGGAGATTAAG 470
|| |||||||| || |||| ||||||||||||||| |||||||||||||| ||||| ||
Sbjct 142 CTCAATCGTCGCAAAATCAGGAACATGGAGATGGAGGAGAAAGTGAGGAGAGAGATCAA- 200
Query 471 ATTC-T-ACGGTTGTTTATGCATCCTCATATTATTCGGCAGTATGAGGTAATAGAGAC-C 527
| || | | | | |||||||||||||| || || || | |||||||| |||||||| |
Sbjct 201 AATCTTGA-GACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTATAGAGACTC 259
Query 528 ACGAGTGACATTTATGTTGTGATGGAGTATGTCAAGTCTGGAGAGCTCTTTGATTATATT 587
||| || |||||| |||| ||||||||||| || ||||| ||||| ||||| || |||
Sbjct 260 -CGACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTGACTACATT 318
Query 588 GTTGAGAAAGGCAGATTACAAGAAGATGAGGCTCGTAACTT-TTTCCAGCAGATAATATC 646
|| ||||| || ||||| || || |||||||| | ||||| ||| ||||||||||||||
Sbjct 319 GTAGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTCTTT-CAGCAGATAATATC 377
Query 647 TGGTGTAGAGTACTGCCATCGTAATATGGTTGTCCATAGAGACCTGAAGCCTGAGAATTT 706
||| || || ||||||||||| |||||||| || || |||||||| |||||||| || ||
Sbjct 378 TGGAGTGGAATACTGCCATCGAAATATGGTGGTTCACAGAGACCTCAAGCCTGAAAACTT 437
Query 707 ACTATTGGATTCGAGGTGTAATATTAAGATTGCAGACTTTGGGTTGAGTAATGTTATGCG 766
|| |||||||| | || ||| | |||||||| || ||||| |||| ||| | |||||
Sbjct 438 GCTTTTGGATTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAATATAATGCG 497
Query 767 GGATGGTCATTTTCTAAAGACGAGTTGTGGAAGCCCCAACTACGCTGCTCCCGAGGTTAT 826
|||||||||||| | ||||| ||||||||||| || || || || ||||| ||||| ||
Sbjct 498 AGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCGGCTCCAGAGGTCAT 557
Query 827 ATCAGGTAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGCGGAGTTATATTGTA 886
|| || |||||||||||||| |||||||||||||| ||||| || || || ||| | ||
Sbjct 558 TTCGGGAAAATTATATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTGATACTCTA 617
Query 887 CGCTCTAT-TATGCGGTACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTCAAGA 945
|||||| | | || || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 618 CGCTCT-TCTCTGTGGGACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTTAAGA 676
Query 946 AAATTAAGGGTGGGATTTACACTCTT-CCAAGTCATTTATCAT-CTGAG-GCTAGAGACC 1002
| || ||||| ||||| || || || || || |||||||| | ||| | ||||||||
Sbjct 677 AGATAAAGGGAGGGATATATACA-TTACCTAGCCATTTATC-TGCTG-GTGCTAGAGATT 733
Query 1003 TGATCCCAAGGATGCTTATAGTTGACCCGGTGAAACGAATCACCATTCCTGAGATCCGTC 1062
||||||| |||||||| |||||||||| |||||||| | ||||| ||||||||||| |
Sbjct 734 TGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCCGGC 793
Query 1063 AACACCGTTGGTTCCA-GACTCATCTCCCTCGTTATCTT-GCTGTCTC-TCCACCGGATA 1119
|||||| ||||||||| | |||| || || | ||| || ||||| || ||| || ||||
Sbjct 794 AACACCCTTGGTTCCAAG-CTCACCTTCCGAGGTAT-TTAGCTGT-TCCTCCTCCAGATA 850
Query 1120 CAGTAG-AGCAGGCTAAAAAGATCAATGAGGAGATAGTTCAAGAAGTGGTTAACATGGGA 1178
|||| | | ||||| |||||||| | |||||||| | |||||||| | || ||||||
Sbjct 851 CAGT-GCAACAGGCGAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGA 909
Query 1179 TTTGATAGAAACCAGGTT-TTGGAATCTCTACGCAACAGAACACAAAACGATG-CTACTG 1236
||||| |||||||| | ||| ||||||| |||||| | || || || |||| | ||||
Sbjct 910 TTTGACAGAAACCACCTCATTG-AATCTCTCCGCAACCGGACCCAGAATGATGGC-ACTG 967
Query 1237 TTACATACTACCTGTTATTGGATAACCGGTTCCGTGT-TCCAAGTGGCTATCTAGAATCC 1295
| |||||||| ||| || |||| || || ||||||| || | |||| ||||| | ||
Sbjct 968 TGACATACTATCTGATACTGGACAATCGTTTCCGTGCCTCTA-GTGGTTATCTCGGGGCC 1026
Query 1296 GAGTTTCAGGAGACAACAGACAG-TGGTTCCAATCC-TATGCG-CACACCTGAA-GCGGG 1351
|||||||| ||||| | || || | | || || ||||| | || | ||| | |
Sbjct 1027 GAGTTTCAAGAGACCATGGA-AGGTACT-CC---CCGTATGCATC-CAGCAGAAAGTGT- 1079
Query 1352 CGCTTCACCTGT-AGGCCA-CTGGATTCCTGCACATG-TGGA-TCA-CTACGG-GTTGGG 1405
|||||||||||| || ||| | || |||| | | || |||| | | | | || |||||
Sbjct 1080 CGCTTCACCTGTTAG-CCATC-GGCTTCCAGGAT-TGATGGAAT-ATCAA-GGAGTTGGC 1134
Query 1406 A-GCAAGATCACAAGT-CCCTGTTGATCGAAAATGGGCTCTTGGACTTCAGTCTCATGCG 1463
| | |||| ||| | ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1135 TTG-A-GATCTCAA-TACCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCT 1191
Query 1464 CATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTGTGTTGG 1523
||||| |||||||| |||| ||||| ||||||| || ||||| | ||||||||||||
Sbjct 1192 CATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTGTGTTGG 1251
Query 1524 AAGAAGATTGGTCACTACAACATGAAATGTC-GATGGGTTCCTG---GTTTAGCTG--AT 1577
|||||||| || |||||||||||||| || | ||||||||||| | || || ||
Sbjct 1252 AAGAAGATAGGGCACTACAACATGAAGTG-CAGATGGGTTCCTAACAGCACAGATGGTAT 1310
Query 1578 GGTCAGAATACT--ATGGTCAACAATCAGCTGC-ACTTCAGAGATGAATCCAGCATCATT 1634
| |||| | ||| ||| || | || ||| | |||| |||| || |||||||| ||
Sbjct 1311 GCTCAGTA-ACTCGATG--CA-CGAT-AGCAACTACTTTGGAGACGAGTCCAGCATAATA 1365
Query 1635 GAGGATGACTGT-GCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAA 1693
||| | || || || | | || || | ||| |||| |||||| ||||| | || ||
Sbjct 1366 GAGAACGA-TGCAGCTGTTAAGTCGCCGAATGTTGTCAAGTTTGAAATTCAGTTGTATAA 1424
Query 1694 AGCCCGGGAAGAGAAGTA-CTTGCTGGATATACAGAGAGTT-AACGGTCCGCAGTTTCTC 1751
| | ||||| || ||||| || |||||| | |||||||| || ||||| ||||| ||
Sbjct 1425 AACTCGGGACGACAAGTATCTA-CTGGATTTGCAGAGAGTACAA-GGTCCTCAGTT-CTT 1481
Query 1752 -TTCTTGGATCTATGCGCCGCCTTTCTT 1778
||||||||||| || || || ||||||
Sbjct 1482 GTTCTTGGATCTCTGTGCTGCTTTTCTT 1509
> Ahg330549 jgi|Araly1|330549|fgenesh1_pm.C_scaffold_7002776
Length=1476
Score = 91.6 bits (49), Expect = 2e-17
Identities = 98/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1666 TCATCAAATTTGAACTTCAGCTATACAAAGCCCGGGAAGAG-AAGTACTTGCTGGATATA 1724
|||||||||||||||||||||||||||||| || |||| | ||||| ||| |||| ||
Sbjct 1343 TCATCAAATTTGAACTTCAGCTATACAAAGTACGTGAAG-GCAAGTATTTGTTGGACATC 1401
Query 1725 CAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAG 1784
|| ||| || | || || |||||| ||||||| ||| |||| | || ||||| | ||||
Sbjct 1402 CAAAGAATTGATGGACCTCAGTTTATCTTCTTTGATATATGTGTTGCGTTTCTCAGAGAG 1461
Query 1785 CT 1786
||
Sbjct 1462 CT 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77742190045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5