BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29170.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936721 jgi|Araly1|936721|scaffold_500912.1                        593    4e-169


> Ahg936721 jgi|Araly1|936721|scaffold_500912.1
Length=406

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 367/389 (94%), Gaps = 4/389 (1%)
 Strand=Plus/Plus

Query  103  AATGGCGTCAAGGAGAAGTGTACGGTATGCACAGCTTCCAGGAGATGAAGATGATGAAGG  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  20   AATGGCGTCAAGGAGAAGTGTACGGTATGCACAGCTTCCAGGAGATGAAGATGATGAAGA  79

Query  163  CTATGGAAATGGTGTTGGT-GAAAGGAGAGATTTCGATCCTCGGTTCGATTATTCACCGA  221
             |||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||
Sbjct  80   TTATGGAAATGGTGTTGGTCGAA-GGAGAGATTTCGATCCTCGTTTCGATTATACACCGA  138

Query  222  AAGCATTTGATAGAGTTCCATGGAAATCTATAGCATTAGCTGTgtttcttttgtttcttg  281
            || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct  139  AATCATTTGATAGAGTACCATGGAAATCAATAGCATTAGCTGTGTTTCTTCTGTTCCTTG  198

Query  282  gttgcttgcttcttcttttgtcgttttttatcttcATTGGTCACATGGAAGGAGATAGCT  341
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  199  GTTGTTTGCTTCTTCTTTTGTCGTTTTTTATCTTTATTGGTCACATGGAAGGAGATAGCT  258

Query  342  CTCAAGGTTATGCG-TTACTTGTTCTTGGGATCCTTACTTTTCTCCCTGGTTTCTACGAG  400
            |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  CTCAAGGTTATGCTCTT-CTTGTTCTTGGGATCCTTACTTTTCTCCCTGGTTTCTACGAG  317

Query  401  ACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTTGCAGCCATTCCC  460
            ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct  318  ACCCGGATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTCGCTGCAATTCCC  377

Query  461  TCTTACTGAACTCAAGTAACTGGAGAAGT  489
            || |||||||||||||||||| |||||||
Sbjct  378  TCCTACTGAACTCAAGTAACTCGAGAAGT  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5