BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29180.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896869 jgi|Araly1|896869|Al_scaffold_0005_835 2427 0.0
Ahg891786 jgi|Araly1|891786|Al_scaffold_0007_3772 1040 0.0
> Ahg896869 jgi|Araly1|896869|Al_scaffold_0005_835
Length=1542
Score = 2427 bits (1314), Expect = 0.0
Identities = 1473/1549 (95%), Gaps = 14/1549 (1%)
Strand=Plus/Plus
Query 230 ATGGGTGGATGTGTGTCAACCCATTCAAAAGCGATTAGGCCTAGGAGGAAAGGCCGTCGT 289
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1 ATGGGTGGATGTGTGTCAACCCATTCAAGAGCGATTAGGCCTCGGAGGAAAGGCCGTCGT 60
Query 290 AGATCTTCCAAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATGCTAATATTAGAAGG 349
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 61 AGATCTTCTAAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATTCAAATATTAGAAGG 120
Query 350 CCTAGTGACGTTGGGAGCCGAGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTTTGAC 409
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAGTGACGTTGGGAGCCGCGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTTTGAC 180
Query 410 TCTGTCAGTGTTCTTGATTCGGATGAGGATGAGGACTTTATCAGCTTACCTG-A--AGAA 466
||||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct 181 TCTGTTAGTGTTCTTGATTCGGATGAGGATGAGGACTTCATCAGCTTACCTGAAGCAGAA 240
Query 467 AACGTACCATCAACGCCATCAGCGGGTGGTGCGACTGGTAACAATATACCAAATGGTCAA 526
|||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 241 AACGTACCATCAGCGCCATCAGCGGGTGGTGCGAC--G-AGTAATATACCAAATGGTCAA 297
Query 527 GTAGTTCAGTTTGAATCTTCTTCGTGC-TTCGTGGATGGTAAAGGAAAGTACGAAGAATA 585
|||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 298 GTAGTTCAATTTGAATCTTCTTCGTGCATT-GTGGATGGGAAAGGAAAGTACGAAGAATA 356
Query 586 CCATGAGACTTACTTGAAGATAGACGGGAGTAAAGCCGAGAAGTTTGTGTCAAAAGGGAT 645
||| |||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||
Sbjct 357 CCACGAGACTTACTTGAAGATAGATGGGAGTAAAACCGAGAAGTTTGTGACGAAAGGGAT 416
Query 646 GTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGAAACTGATGGA 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 GTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGAAACTAATGGA 476
Query 706 CCATGCAAGCTTTAAAGGCTTGAAGGATCCA-AAACGTAACTCTCAAGAGAAAACCCTGA 764
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 477 ACATGCAAGCTTTAAAGGCTTGAAGGA-ACAGAAACGGAACTCTCAAGAGAAAACCCTGA 535
Query 765 GAACCAGCCTGAGCCGGTTGATGCCAACAGTCAGTTTTAATGACAAGACTCTAAACTCAC 824
||||||| ||||| || |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 536 GAACCAGTCTGAGTCGATTGATGCCAACAGTTAGTTTCAATGACAAGACTCTAAACTCAC 595
Query 825 CCACATCTCAGAAACGAAAATCCGCTGTTTATCGGCTTTCTTTCAAAAGGAGGTCGTGTG 884
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 596 CCACATCTCAGAAACGAAAATCCGCTGTTTATCGGCTTTCCTTCAAGAGGAGGTCGTGCG 655
Query 885 ATGGTGAGGAAGTTACTGAGCAACGTAAGTTGTTGTACCGTCCAAAAGCGGGATTCACAA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATGGTGAGGAAGTTACTGAGCAACGTAAGTTGTTGTACCGTCCAAAAGCGGGATTCACAA 715
Query 945 TTCCTTCCTCGGGCAGAGAAAAGCAGTCTAGCGGAAGTTGGT-CTGAGATACCGCCTTCA 1003
|||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||
Sbjct 716 TTCCTTCCTCGGGCAGAGAAAAGCAGTCCAGCGGAAGTTGGTGC-GAGATACCACCTTCA 774
Query 1004 ACTTTTAAACTCCGTGGAGAAACCTATTTCAAAGACAAAAAGAAATCCCCAGCTCCAAAT 1063
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 775 ACTTTTAAACTCCGTGGAGAAACATATTTCAAAGACAAAAAGAAATCCCCAGCTCCAAAT 834
Query 1064 CAGTGTCCATACACTCCTATAGGTGTTGACTTGTTTGTCTGTCCAAGGAAGATTGATCAT 1123
|||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||
Sbjct 835 CAGTGTCCATACACTCCTATTGGCGTTGACTTGTTTGCCTGTCCAAGGAAAATTGATCAT 894
Query 1124 ATCGCCCAACACATCGAGCTTCCAAACATCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTT 1183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 ATCGCCCAACACATCGAGCTTCCAAATATCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTT 954
Query 1184 GTTGTCAACATTCAGTTACCAACCTATCCTGCTGCAATGTTCCTTGGGGACAGTGATGGA 1243
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 955 GTTGTCAACATTCAGTTACCAACCTATCCTGCTGCAATGTTCCTTGGCGATGGTGATGGA 1014
Query 1244 GAAGGCATGAGCATTGTACTTTATTTTAAATTACGAGACAATCACGAAAAAGAAACCTCT 1303
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 1015 GAAGGCATGAGCATTGTACTTTACTTTAAATTAAGAGACAATTACGAAAAAGAAACCTCT 1074
Query 1304 CAGCAATATCAGGAGAGCATCAAGAAACTTGTCAATGATGAGATGGAGAAGGTAAAAGGG 1363
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAGCAGTATCAGGACAGCATCAAGAAACTTGTCAATGATGAGATGGAGAAGGTAAAAGGG 1134
Query 1364 TTTGCTAAAGACAGCAACGTTGCTTTCCGTGAAAGGCTTAAGATAGTAGCTGGACTTGTT 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTTGCTAAAGACAGCAACGTTGCTTTCCGTGAAAGGCTTAAGATAGTAGCTGGACTTGTT 1194
Query 1424 AACCCCGAAGATCTAGCTCT-AAGCTCGACTGAAAAGAAGCTTGTACAGGCTTACAATGA 1482
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1195 AACCCCGAAGATCTAGC-CTTAAGCTCTACTGAAAAGAAGCTTGTACAGGCTTACAATGA 1253
Query 1483 AAAACCTGTCCTCTCTCGTCCTCAACACAACTTCTTTAAGGGTCCAAACTACTTCGAGAT 1542
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1254 AAAACCCGTCCTCTCTCGTCCTCAACACAACTTCTTTAAGGGTCCAAACTACTTTGAGAT 1313
Query 1543 TGATCTGGATGTACATCGATTCAGCTACATATCTCGAAAAGGACTTGAAGCATTCAGAGA 1602
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1314 TGATTTGGATGTACATCGATTCAGCTACATATCACGAAAAGGACTTGAAGCATTCAGAGA 1373
Query 1603 TCGACTAAAAAACGGAACTCTTGATCTCGGCTTAACCATCCAGGCTCAAAAACCGGAAGA 1662
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1374 TCGACTGAAAAACGGAACTCTTGATCTCGGCTTAACTATCCAGGCTCAAAAACCAGAAGA 1433
Query 1663 GCTGCCGGAACAAGTCCTATGCTGTCTGAGGCTGAGCAAGATTGACTTCGTAGACCACGG 1722
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1434 GCTGCCGGAACAAGTCCTATGTTGTCTAAGGCTGAGCAAGATTGACTTCGTTGACCACGG 1493
Query 1723 TCAGATCCCAATGCTTTTGATCCCGGAGGATGGGGAAACTCAAGTGTAA 1771
||| ||||| | |||||||||||||||||||| ||||| ||||||||||
Sbjct 1494 TCAAATCCCGAGGCTTTTGATCCCGGAGGATGAGGAAAATCAAGTGTAA 1542
> Ahg891786 jgi|Araly1|891786|Al_scaffold_0007_3772
Length=1551
Score = 1040 bits (563), Expect = 0.0
Identities = 1253/1578 (79%), Gaps = 79/1578 (5%)
Strand=Plus/Plus
Query 230 ATGGGTGGATGTGTGTCAACCCATTCAA-AAGCGATTAGGCCTA-GGAGGAAAGGCCGTC 287
|||||| |||| ||||||| ||||||| ||| |||||||| | | |||||||| ||||
Sbjct 1 ATGGGTACATGTATGTCAACTCATTCAAGAAG-AATTAGGCC-ACGAAGGAAAGGTCGTC 58
Query 288 GTAGATCTTCC-AAACACTTTTCTAAAGTGTCTGATATTGTTCCTCATGCTAATATTAGA 346
| |||| |||| |||||| |||||| ||||||||||||| || ||||| | ||||||||
Sbjct 59 GGAGAT-TTCCAAAACACATTTCTAGAGTGTCTGATATTATTTCTCATCCAAATATTAG- 116
Query 347 AGGCCT-AGTGACGTTGGGAGCCGAGTTTCTTTTGCTATCTCGCAAGATGATGCATGGTT 405
| | || ||||| ||||| | || | ||||||| ||| || ||| | ||||| |||||
Sbjct 117 ACGACTAAGTGATGTTGGAATCCAAACCTCTTTTGATATTTCTCAAAACGATGCGTGGTT 176
Query 406 TGACTCTGTC-AGTGTTCTTGATTCGGA-TGAGGATGAGGACTTTATCAGCTTACCTGAA 463
||| ||| || ||| || || || || | ||||| |||||||| ||| ||| ||||
Sbjct 177 TGATTCT-TCAAGTCTT-TT--CTCTGACT-CTGATGACGACTTTATTAGCCTACATGAA 231
Query 464 GAAAACGTACCATCAACGCCATCAGCGGGTGGTGCGACT-GGTAACAATATACCAAATGG 522
| | || || | | || |||||||| | | ||| ||||| ||||||||
Sbjct 232 GCTGA--TA--ATGTTTG--GTTAGAGGGTGGTG-TAATGGGT---AATATTCCAAATGG 281
Query 523 TCAAGTAGTTCAGTTTGA-ATCTTCTTCGTGC-TTCGTGGATGGTAAA-GGAAAGTACGA 579
||| || ||||||||||| | ||||||| ||| || || ||||| ||| ||||| || ||
Sbjct 282 TCAGGTGGTTCAGTTTGAGA-CTTCTTCATGCATT-GTTGATGG-AAATGGAAATTATGA 338
Query 580 AGAATACCATGAGACTTACTTGAAGA-T-A-GACGGGAGTAAAGCCGAGAAGTTTGTG-T 635
|||||||||||||| ||||||||| | | | | ||| | |||| |||||||||| ||
Sbjct 339 AGAATACCATGAGAGTTACTTGAAAATTGATGGCGGCAATAAAATCGAGAAGTTTATGAG 398
Query 636 CAAAAGGGATGTACAAGGATCCGAGTGGTCTCTCTGTTCTTACTGGAAACAACAAGAAGA 695
| || || | ||||| ||| | | | || | ||| || | ||||||||||||||||| |
Sbjct 399 C-AACGGTTTATACAAAGATACTAATAGTTTGTCTATTATCACTGGAAACAACAAGAATA 457
Query 696 AACTGA-TGGACCATGC------AAGCTTTAAAGGCTTGAAGGATCCAAAACGTAACTCT 748
||| | |||||||| | ||||||||||| ||||| || | | | |||| ||
Sbjct 458 AAC-AATTGGACCATACTTATAGAAGCTTTAAAGTATTGAAAGAAATAGACCCTAACCCT 516
Query 749 CAAGAGAAAACCCTGAGAA-CCAGCCTGAGCCGGTTGATGCCAACAGTCAGTTTTAATGA 807
||||| |||| | | | || ||| ||||||||||||||||||| || ||||| || ||
Sbjct 517 CAAGA-AAAAACATTAAAATCCAATTTGAGCCGGTTGATGCCAACCGTTAGTTTCAACGA 575
Query 808 CAAGACTCTAAACTCACCCACATCTCAGAAA-CGAAAATCCGCTGTTTATC-GGCTTTCT 865
||||||||||||||| ||||||||||| ||| || || || || ||||||| | | ||||
Sbjct 576 CAAGACTCTAAACTCCCCCACATCTCA-AAAGCGGAAGTCAGCGGTTTATCAGAC-TTCT 633
Query 866 TTCAAAAGGAGGTCGTGTGATGGTGAGGAAGTTACTGAGCA-A---CGT----AAG-TTG 916
||||| ||||| || ||||||||||| |||||||| ||||| | ||| ||| |||
Sbjct 634 TTCAAGAGGAGATCATGTGATGGTGAAGAAGTTACCGAGCATAGGTCGTCCAAAAGATTG 693
Query 917 TTGTACCGTCCAAAAGCGGGATTCACAATTCCTTCCTCGGGC-A-GAGAA-AAGCAGTCT 973
||||||||||| ||||| |||| ||| ||||| | || | | | ||||| |||| ||
Sbjct 694 TTGTACCGTCCCAAAGCCGGATACACCATTCCGTGCTATGCCAATGAGAAGCAGCAATC- 752
Query 974 AGC-GGAAGTTGGTCTGAGATACCGCCTTC-AACTTTTAAACTCCGTGGAGAAACCTATT 1031
| | |||||||||| ||||||||| ||||| ||| || ||| | ||||| ||||| ||||
Sbjct 753 ATCAGGAAGTTGGTGTGAGATACCTCCTTCAAAC-TTGAAATTACGTGGCGAAACTTATT 811
Query 1032 TCAAAGACAAAAAG-AAATCCCCAGCTCCAAATCAGTGTCCATACACTCCTATAGGTGTT 1090
||||||| ||| | |||| || |||||||| || |||||||||||||| || ||||||
Sbjct 812 TCAAAGA-TAAACGAAAATATCCGGCTCCAAACCAATGTCCATACACTCCAATTGGTGTT 870
Query 1091 GACTTGTTTGTCTGTCCAAGGAAGATTGATCATATCGCCCAACACATCGAGCTTCCAAAC 1150
||||||||||| ||||||| |||||||||||||| ||||||||||| || ||||| |||
Sbjct 871 GACTTGTTTGTGTGTCCAAAAAAGATTGATCATATAGCCCAACACATTGAACTTCCCAAC 930
Query 1151 ATCAAAGCCGAGGCAAAGCTCCCTGCTCTTCTTG-TTGTCAACATTCAGTTACCAACCTA 1209
||||||||||||| ||| ||||||||||| ||| |||||||||| ||||| ||||| ||
Sbjct 931 ATCAAAGCCGAGGTGAAGTTCCCTGCTCTT-TTGATTGTCAACATCCAGTTGCCAACTTA 989
Query 1210 TCCTGCTGCAATGTTCCTTGGGGACAGTGATGGAGAAGGCATGAGCATTGTACTTTATTT 1269
||| || |||||||| || || || ||| |||||||||||||||||||||||||||||||
Sbjct 990 TCCAGCCGCAATGTTTCTCGGTGATAGTAATGGAGAAGGCATGAGCATTGTACTTTATTT 1049
Query 1270 TAAATTACGAGACAATCACGAAAAAGAAACCTCTCAGCAATATCAGGAGAGCATCAAGAA 1329
||||||| |||| ||| ||||||||||| |||||| ||||| || || |||||||||||
Sbjct 1050 TAAATTAAGAGAAAATTTCGAAAAAGAAATCTCTCAACAATACCAAGACAGCATCAAGAA 1109
Query 1330 ACTTGTCAATGATGAGATGGAGAAGGTAAAAGGGTTTGCTAAAGACAGCAACGTTGC-TT 1388
||| || | ||||||||||| || || ||||||||||| ||||||| || ||| | ||
Sbjct 1110 ACTAGTGGAGGATGAGATGGAAAAAGTGAAAGGGTTTGCAAAAGACAACATTGTTCCATT 1169
Query 1389 TCCGTGAAAGGCTTAAGATAGTAGCTGGACTT-GTTAACCCCGAAGATCT-AGCTCTAAG 1446
|| ||||| ||||||| || ||||| ||| || |||||||| || || || ||| || ||
Sbjct 1170 TC-GTGAACGGCTTAAAATCGTAGCCGGA-TTAGTTAACCCAGAGGAACTCAGC-CTTAG 1226
Query 1447 CTCGACTGAAAAGAAGCTTGTACAGGCTTACAATGAAAAACCTGTCCTCTCTCGTCCTCA 1506
|| ||||||| ||||||| |||| ||||||||||||||||| || || ||||| |||||
Sbjct 1227 TTCTACTGAAAGGAAGCTTATACAAGCTTACAATGAAAAACCCGTGCTTTCTCGCCCTCA 1286
Query 1507 ACACAACTTCTTTAAGGGTCCAAACTACTTCGAGATTGATCTGGATGTACATCGATTCAG 1566
|||||||||||| |||||||| |||||||| ||||||||| |||| || ||||| || ||
Sbjct 1287 ACACAACTTCTTCAAGGGTCCTAACTACTTTGAGATTGATTTGGACGTGCATCGGTTTAG 1346
Query 1567 CTACATATCTCGAAAAGGACTTGAAGCATTCAGAGATCGACTAAAAAACGGAACTCTTGA 1626
|||| | || ||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1347 CTACCTCTCAAGAAAAGGGCTTGAAGCATTCAGAGATCGACTTAAAAATGGAACTCTTGA 1406
Query 1627 TCTCGGCTTAACCATCCAGGCTCAAAAACCGGAAGAGCTGCCGGAACAAG-TCCTATGCT 1685
|||||||||||| ||||| |||||||||| || ||| | || ||| ||| || |||| |
Sbjct 1407 TCTCGGCTTAACTATCCAAGCTCAAAAACAAGAGGAGTTACCAGAA-AAGGTCTTATGTT 1465
Query 1686 GTCTGAGGCTGAGCAAGATTGACTTCGTAGACCACGGTCAGATCCCAATGCTTTTGATCC 1745
|||| || | |||||||||||||| || ||| ||||||| || || | ||||| || |
Sbjct 1466 GTCTAAGATTAAGCAAGATTGACTTTGTTGACAACGGTCAAATTCCGACACTTTTAATTC 1525
Query 1746 CGGAGGATGGGGAAACTC 1763
| || || || ||| |||
Sbjct 1526 CTGAAGAAGGAGAATCTC 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5