BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29185.2
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484688 jgi|Araly1|484688|fgenesh2_kg.5__680__AT3G29185.1 857 0.0
> Ahg484688 jgi|Araly1|484688|fgenesh2_kg.5__680__AT3G29185.1
Length=1198
Score = 857 bits (464), Expect = 0.0
Identities = 538/574 (94%), Gaps = 4/574 (1%)
Strand=Plus/Plus
Query 558 GCAGATTGGATTTTTCCCAAAGGAGAGAGCGTTTTCGCTGAGGTACCAAACCGCTGGAAT 617
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 453 GCAGATTGGATTTTTCCCAAAGGAGAGAGCGTTTTCGTTGAGGTATCAAACCGCTGGAAT 512
Query 618 GTTGGATACGACGTTAAGGCAGGGCGTGCTCGGGGAGGATGACACGGGAGAAGAATCACC 677
|||||||||||| |||||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 513 GTTGGATACGACATTAAGGCAAGGCGTTCTCGGGGAAGATGACACTGGCGAAGAATCACC 572
Query 678 AAGAAATCTTAAACTTCCATCTCGGCGTCCGTCTTTAGTATGTGAGAACTGTTTGTATTC 737
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 573 AAGAAATCTTAAACTTCCATCTCGGCGTCCTTCTTTAGTATGCGAGAACTGCTTGTATTC 632
Query 738 TAAGGAGATAGATAGAAGGGCTAGAGCCTTTCACATCATGGATCCTAAAGGTGTTCTTGA 797
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 633 TAAGGAGATGGATAGAAGGGCTAGAGCCTTTCACATTATGGATCCCAAAGGTGTTCTTGA 692
Query 798 AATGCTTATTGTTTTCCTCGAGGAAAGAGGGTTAGAGAATCTCGCTCATCCAGTCCTCGA 857
|||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 693 AATGCTTATTGTTTTCCTTGAGGAAAGAGGGTTAGACAATCTCACTCATCCAGTCCTCGA 752
Query 858 TAACGCTC-AGAACGATGCAGAAAGGATAAACCCATTTCTCGGTACTTGGAAAGGTCGTT 916
|||||||| || | |||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 753 TAACGCTCAAG-ATGATGCAGAAAGGATTATCCCATTTCTAGGTACTTGGAAAGGTCGTT 811
Query 917 CGGTAACAAAACGAAGCGGTGTCTATGGAGCAACACTATCAGAAGCCGATACTGTTGCTG 976
| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 812 CAGTAACAAAACGAAGTGGTGTCTATGGAGCAACACTATCCGAATCCGATACTGTTGCTG 871
Query 977 TTCTTGAAATGAATGACAAAGGTCAAGTAGTCCAGGATATTTCGTCGACATCGGATGAGA 1036
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 872 TTCTTGAAATAAATGACAAAGGCCAAGTAGTCCAGGATATTTCCTCGACATCGGATGAGA 931
Query 1037 AAAAAGTAACAACAAATGTGCACTGGGAAGGGAAA-ATGTCGAAAGACTTGGTTACATTC 1095
||||||||||||||||||| |||||||| |||||| | ||||||| ||||||||||||||
Sbjct 932 AAAAAGTAACAACAAATGTACACTGGGAGGGGAAACA-GTCGAAAAACTTGGTTACATTC 990
Query 1096 GCGGAAGGATACCAAATGACTCTGTTACCCGGAG 1129
||||||||||||||||||||||||||||| ||||
Sbjct 991 GCGGAAGGATACCAAATGACTCTGTTACCGGGAG 1024
Score = 689 bits (373), Expect = 0.0
Identities = 425/450 (94%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCTGCTACTTCCTTCACTTGCTCACTTCCTTTTACTCCACTATCCAAATCCCTT 60
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 10 ATGGCTGCTACTACTTCCTTCACTTGCTCACTTCCTTTTGCTCCACTAACCAAATCCCTC 69
Query 61 AAACCCATTCGTTCCCCAATTCTACGCTCAGACTATGGAACCAGCAGAAGCTTTGTTATA 120
| |||||||| ||||||||||||||||| | |||||||| | ||||||||||||||||
Sbjct 70 AGACCCATTCAATCCCCAATTCTACGCTCGGGCTATGGAA-C--CAGAAGCTTTGTTATA 126
Query 121 AGATCCATGACGGTTCAAGAAGATGACAAGAGAACAAGCGATGAATCAATGAGTATTGAC 180
||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 127 AGATCCATGGCGGTTCAAGAAGATGACAAGAGAACAACCGATGAAGCAATGAGTATTGAC 186
Query 181 AATTTACGAGGATTCGTCGATCTTAATGTCGGAAAATGGACTGGCTCCTTTCATCAATTT 240
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AATTTACGAGGATTTGTTGATCTTAATGTCGGAAAATGGACTGGCTCCTTTCATCAATTT 246
Query 241 GATGGTAATGGGAATTTGTTACATAAGATTGATACACGTCTTTCAGCTAGTTCTTATGGA 300
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 247 GATGGTGATGGGAATTTGTTGCATAAGATTGATACACGTCTTTCAGCTAGTTCTTATGGA 306
Query 301 GAAGATGAGCTCCTTAGTCTTAATCAATCGTTATATATAAAGCAGCCTACATCAGCTACT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GAAGATGAGCTTCTTAGTCTTAATCAATCGTTATATATAAAGCAGCCTACATCAGCTACT 366
Query 361 TCAGTTTCCGAAGAGGAGGAAGAGGAACCGGAATGGGTAGAGTACAAAATTAAAGAAACC 420
||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 367 TCAGTTTCCGAAGAGGAAGAGGAGGAACCGGAATGGGTTGAATACAAAATTAAAGAAACC 426
Query 421 AATATGTTCACTGTGGACAAGTATCAGCAG 450
|||||||||||||||||||| |||||||||
Sbjct 427 AATATGTTCACTGTGGACAAATATCAGCAG 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5