BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29200.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484689 jgi|Araly1|484689|fgenesh2_kg.5__681__AT3G29200.1 1834 0.0
> Ahg484689 jgi|Araly1|484689|fgenesh2_kg.5__681__AT3G29200.1
Length=1204
Score = 1834 bits (993), Expect = 0.0
Identities = 1141/1210 (94%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 2 TCTCTCCCTCTCTCACCAACTCTTTCTCTTTACCCACTGCACCTACCCCCAAACAATCCC 61
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTGTCTCTTACCAACTCTTTCTCTTTACCCACTGCACCTACCCCCAAACAATCCC 60
Query 62 ----T--TTTA-ACATCTCTCATTCCTCTGCTCATGATTCTTTGTCTCTTCCTCTGATTT 114
| |||| |||||||| |||||||| | |||||||| ||||||||||||||||||
Sbjct 61 TTTATAGTTTATACATCTCTAATTCCTCTACAGATGATTCTCTGTCTCTTCCTCTGATTT 120
Query 115 CTCAATCCTCTGTTTTCTCCGTCTCCTCTGtttt-tttCACATCAATGGAAGCGTCATTG 173
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 CTCAATCCTCTGTTTTCTCCGTCTCCTCTGTTTTGTTTCACATCAATGGAGGCGTCATTG 180
Query 174 TTGATGAGATCGTCTTGTTGCTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAA 233
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGATGAGATCGTCTTGTTGTTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAA 240
Query 234 TTATCAACCTCAACACCCATTTCCACTCTTCTTCCTCTTCCATCAACCAAATCTTCTTTC 293
||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 241 TTATCAACCTCCACACCCATTTCCACTCTTCTTCCTTTTCCATCATCCAAATCTTCCTTC 300
Query 294 TCTGTTCGTTG-----TT-CTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCAGCTCT 347
|| ||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GCTATTCGTTGTTCTCTTCCTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCATCTCT 360
Query 348 GTTCACGCCGTTATGACACTCGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGT 407
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTCACGCCGTTATGACACTTGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGT 420
Query 408 GAGAGTTTGACTCTTGAAGGTATTAGAAACTCTTTGATCCGTCAAGAGGACAGCATTATA 467
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 421 GAGAGTTTGACTCTTGAAGGTATTAGAAACTCATTGATCCGTCAAGAGGATAGCATTATA 480
Query 468 TTTGGGCTATTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCT 527
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGGGTTGTTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCT 540
Query 528 TTTGACATGGATGGTTTCAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAG 587
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTGACATGGATGGTTTTAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAG 600
Query 588 CTTCACGCTAAGGTTGGTAGGTTTAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGAT 647
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTCACGCTAAGGTTGGTAGGTTCAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGAT 660
Query 648 CTACCAGAGCCTATGTTGCCTCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGAT 707
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTACCAGAGCCTATGTTGCCGCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGAT 720
Query 708 TCGATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGACCTTGTTCCAAGACTT 767
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 TCAATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGATCTTGTTCCAAGACTA 780
Query 768 GTGAAGAAAGGCGATGATGGTAACTACGGCTCAACAGCTGTCTGTGACGCTATCTGCCTT 827
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 781 GTGAAGAAAGGCGATGATGGTAATTACGGATCAACAGCTGTCTGTGACGCTATCTGCCTT 840
Query 828 CAGTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCC 887
|||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct 841 CAGTGTCTATCAAAGAGGATCCATTACGGTAAATTTGTTGCAGAGGCCAAATTCCAAGCC 900
Query 888 TCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCACTGATGGATATG 947
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 901 TCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCATTGATGGATATG 960
Query 948 CTGACATTCCCGACTGTGGAAGATGCGATAAAGAAGAGAGTTGAGATGAAAACCCGAACA 1007
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 CTGACATTCCCGACTGTGGAAGATGCGATTAAGAAGAGAGTTGAGATGAAAACCCGAACA 1020
Query 1008 TACGGGCAAGAAGTGAAAGTTGGGATGGAGGagaaagaagaagaagaagaagaagGGAAT 1067
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||| | |
Sbjct 1021 TACGGGCAAGAAGTGAAAGTCGGGATGGAAGAGAAAGAAGAAGAAGAAG--GAA---A-T 1074
Query 1068 GAATCTCATGTTTACAAAATCAGTCCGATCTTAGTTGGTGACTTATATGGAGATTGGATC 1127
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1075 GAATCTCATGTTTACAAAATCAGTCCAATCTTAGTTGGTGACTTGTATGGCGATTGGATC 1134
Query 1128 ATGCCTTTAACAAAAGAGGTTCAAGTGGAGTACTTGCTCAGAAGACTGGACTGAGGCAAC 1187
||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 1135 ATGCCCTTAACAAAGGAGGTTCAAGTTGAGTACTTACTCAGAAGACTGGACTGAGACAAG 1194
Query 1188 AACAAAATAA 1197
|| |||||||
Sbjct 1195 AAAAAAATAA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5