BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29270.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484697 jgi|Araly1|484697|fgenesh2_kg.5__689__AT3G29270.2 1589 0.0
> Ahg484697 jgi|Araly1|484697|fgenesh2_kg.5__689__AT3G29270.2
Length=1797
Score = 1589 bits (860), Expect = 0.0
Identities = 1040/1123 (93%), Gaps = 28/1123 (2%)
Strand=Plus/Plus
Query 159 GTTAGGTCTTAGTGACAAACAAGGTATTCATGTTATCCATCCCTGATACTAGAATGTGGA 218
|||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 679 GTTAAGTATTAG-CAGAAACAAGGTATTCATGTTATCCATTCCTGATACCAGAATGTGGA 737
Query 219 ATCTAGCATCGAGTTATCTTACGGGAAACATTGGACCGAAAAACGATATCAGAAGACCGG 278
|| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 738 ATTTAGCATCGAGTTATCTTACGGGAAACATTGGACCGAAAAACGAAATAAGAAGACCAG 797
Query 279 TCCATGCTCATGCGGAGTGTTCAGATGACGATGTATCTTCTGTAGGTAGTAAAGACGAAG 338
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 798 TTCATGCTCATGCGGAGTGTTCAGATGACGATGCATCTTCTGTAGGCAGTAAAGACGAAG 857
Query 339 GTCTCGAGTGTCCTATATGCTGGGAATCATTTAATATAGTTGAAAACGTTCCGTATGTGT 398
|||| ||||||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct 858 GTCTTGAGTGTCCTATTTGTTGGGAATCATTTAATATAGTTGAAAACGTTCCTTACGTGT 917
Query 399 TATGGTGTGGACATACGATGTGTAAAAACTGCATTTTGGGACTTCAATGGGCTATTGTGA 458
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 918 TATGGTGTGGACACACGATGTGTAAAAACTGCATTTTAGGACTTCAATGGGCTATTGTGA 977
Query 459 AATTGCCTACTCACCCGGTTCAGCTTCCTCTCTTCATTTCATGCCCCTGGTGCAACCTTT 518
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 978 AATTACCTACTCACCCGGTTCAGCTTCCTCTCTTCATTTCATGCCCCTGGTGTAACCTAT 1037
Query 519 TGTCTTTCCGTCTGGTCTTCAGAGGAACACTCAGATTCCCTCACAAGAACTACTTTGTGC 578
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1038 TGTCCTTCCGTCTGGTATTCAGAGGAACACTCAGATTTCCTCACAAGAACTACTTTGTGC 1097
Query 579 TTTGGATGGTCGAGAGGATGAATGGAGAGAGACGTAACTCACCTGGTGGAGCTC-AAACA 637
|||||||||| |||||||||||||| || ||||| |||||||| | | ||| | ||||
Sbjct 1098 TTTGGATGGTTGAGAGGATGAATGGCGAAAGACGCAACTCACCCGTTATAGCACAAAAC- 1156
Query 638 GATGGAAACAATGATCATACAAGGGAAACTCCATCTCCATGTCTCCACAATCGCCATCAT 697
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1157 GATGGGAACAATGACCATACAAGAGAAACTCCATCTCCATGTCTCCACAATCGCCATCAT 1216
Query 698 CGCAGTCAACCTGAACCATCACGTTCTGTTAATGATCATCGCATTCCAAGGGACAACATA 757
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1217 CGCAGTCAACCTGAACCATCACGTTCTGTTAATGATCATCGCATTCCCAGGGACAACATA 1276
Query 758 CAAACTTCACTGAGGAAGTCTCTGGTTTTCTTTGTCCAGTTGACAGCAAAGTTCCCATTA 817
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1277 CAAACTTCACTGAGGAAGTCTCTGGTTTTCTTTGTCCAATTGACAGCAAAGTTCCCATTG 1336
Query 818 GTTGTCATATTTC-TGCTGATAATACTCTATGCAATACCGACCAGTGCAGCCATATTGGC 876
||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1337 GTTGTCATA-TTCTTGCTGATAATACTCTATGCAATACCGACAAGTGCAGCCATATTGGC 1395
Query 877 GATGTACATTCTAGTCACTCTCTTGCTGGCTCTACCGTCGTTTCTCATCCTCTACTTCGC 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 GATGTACATTCTAGTCACTCTCTTGCTGGCTCTACCGTCGTTTCTCATCCTCTACTTCGC 1455
Query 937 TTATCCTTGTCTCGACTGGCTTGTTCGAGAGATTGTCACATGAACTTTCTAAGGATGCGT 996
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1456 CTATCCTTGTCTTGACTGGCTTGTCCGAGAGATTGTCACATGAACTTTCTAAGGATGCGT 1515
Query 997 TCAGAAACTTCCCATTCCTAATTTGACGACTTTTCTTCAACAACTGAGACCCAAGATCGG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TCAGAAACTTCCCATTCCTAATTTGACGACTTTTCTTCAACAACTGAGACCCAAGATCGG 1575
Query 1057 TC--------ATGTAAGTATAACAATTTCGTAATTACCGTCTTCTTTATCT-ATATATGG 1107
|| |||||||||||||||||||||||||||||||| | |||| | ||||||||
Sbjct 1576 TCCGTCCTTCATGTAAGTATAACAATTTCGTAATTACCGTCTACCTTAT-TGATATATGG 1634
Query 1108 ATGTAGTTTTGGATTGCATTGTTGCTCTACG-AAGCTGGACGTATGTGTTGTAAGGGCTC 1166
|||||||| |||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1635 ATGTAGTTATGGATTGCATTGTTGCTCTATGGAAGCTGGACGCATGTGTTGTAAGGGCTA 1694
Query 1167 TTGCAGAAACTTATTAGTATT-TG-T----G-G-ATTTGTTTGTGAGTGTTTGAG-T--- 1214
||||||||||||||||||||| | | | | |||||||||||| |||||||| |
Sbjct 1695 TTGCAGAAACTTATTAGTATTCTACTATTTGAGGATTTGTTTGTGATTGTTTGAGGTTTT 1754
Query 1215 GTCTCAATAAGATTTATGTATATAAAGTTTATGCAATGTTATT 1257
||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1755 GTCTCAATAAGATTTGTGTATATAAAGTTTATGCACTGTTATT 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5