BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29280.1 Length=680 Score E Sequences producing significant alignments: (Bits) Value Ahg484699 jgi|Araly1|484699|fgenesh2_kg.5__691__AT3G29280.1 1083 0.0 > Ahg484699 jgi|Araly1|484699|fgenesh2_kg.5__691__AT3G29280.1 Length=667 Score = 1083 bits (586), Expect = 0.0 Identities = 646/674 (96%), Gaps = 7/674 (1%) Strand=Plus/Plus Query 1 ACTTTGGTAGTGAATTAAAGAATCGATTtctctctctctcAAGCAACAATGGATgaagga 60 |||||||||| | |||||||||||| | | ||||| |||||||||||||||||||||| Sbjct 1 ACTTTGGTAGAGTGTTAAAGAATCGA--T-T-TCTCTATCAAGCAACAATGGATGAAGGA 56 Query 61 agagaaggagagatagagaagaagaagaagaaagatgaagaaggagaagtgaaggaagga 120 |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| Sbjct 57 AGAGAAGGAGAGAT--AG-AGAAGAAGAAGAAAGAGGAAGAAGGAGAAGTGAAGGAAGGA 113 Query 121 gTAGCATCAATAGCTTTGTTACCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCT 180 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 114 GTAGCATCTATAGCTTTGTTGCCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCT 173 Query 181 AGCTCTATCTGTTATGGCCTCCATGGCACTGAACTAGCTTGTGAGACTGAGTGTAGCCGC 240 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 174 AGCTCTATCTGTTATGGCCTCCATGGCACTGAACTGGCTTGTGAGACTGAGTGTAGCCGC 233 Query 241 GGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAATAGAAAGAAGGAACAA 300 |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 234 GGTGAGGATTATCGGTTGATTAAACTCACCATCATAGACTACAATAGGAAGAAGGAACAA 293 Query 301 ACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCT 360 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 ACAGTTGTAGTGGAATGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCT 353 Query 361 CACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 CACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTA 413 Query 421 TCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATGAAGCAGCAGAGGACCATATCAGA 480 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 414 TCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATAAAGCAGCAGAGGACCATATCAGA 473 Query 481 CAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCGATGAAGATT 540 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 474 CAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCAATGAAGATT 533 Query 541 TCCGGGCTTGATTTTGCTGCGGTGGAAGAGGGACACATAAACTAAGACAGCTTAACTCTT 600 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 534 TCCGGGCTTGATTTTGCTGTGGTGGAAGAGGAACACACAAACTAAGACAGCTTAACTCTT 593 Query 601 TCTTTTTGTGTATACATCATATTTGAATGCTCTTTGAGTCTTTGTTTCATATCGTAGAAC 660 || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 594 TCCTTTTGTGTATACATCGCATTTGAATGCTCTTTGAGTCTTTGTTTCATATCGTAGAAC 653 Query 661 ACAATTAACGCTTT 674 |||||||| ||||| Sbjct 654 ACAATTAATGCTTT 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24970510635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5