BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29280.1

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484699 jgi|Araly1|484699|fgenesh2_kg.5__691__AT3G29280.1         1083    0.0  


> Ahg484699 jgi|Araly1|484699|fgenesh2_kg.5__691__AT3G29280.1
Length=667

 Score = 1083 bits (586),  Expect = 0.0
 Identities = 646/674 (96%), Gaps = 7/674 (1%)
 Strand=Plus/Plus

Query  1    ACTTTGGTAGTGAATTAAAGAATCGATTtctctctctctcAAGCAACAATGGATgaagga  60
            |||||||||| |  ||||||||||||  | | ||||| ||||||||||||||||||||||
Sbjct  1    ACTTTGGTAGAGTGTTAAAGAATCGA--T-T-TCTCTATCAAGCAACAATGGATGAAGGA  56

Query  61   agagaaggagagatagagaagaagaagaagaaagatgaagaaggagaagtgaaggaagga  120
            ||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||||
Sbjct  57   AGAGAAGGAGAGAT--AG-AGAAGAAGAAGAAAGAGGAAGAAGGAGAAGTGAAGGAAGGA  113

Query  121  gTAGCATCAATAGCTTTGTTACCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCT  180
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  114  GTAGCATCTATAGCTTTGTTGCCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCT  173

Query  181  AGCTCTATCTGTTATGGCCTCCATGGCACTGAACTAGCTTGTGAGACTGAGTGTAGCCGC  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  174  AGCTCTATCTGTTATGGCCTCCATGGCACTGAACTGGCTTGTGAGACTGAGTGTAGCCGC  233

Query  241  GGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAATAGAAAGAAGGAACAA  300
            |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct  234  GGTGAGGATTATCGGTTGATTAAACTCACCATCATAGACTACAATAGGAAGAAGGAACAA  293

Query  301  ACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCT  360
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  ACAGTTGTAGTGGAATGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCT  353

Query  361  CACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  CACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTA  413

Query  421  TCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATGAAGCAGCAGAGGACCATATCAGA  480
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  414  TCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATAAAGCAGCAGAGGACCATATCAGA  473

Query  481  CAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCGATGAAGATT  540
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  474  CAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCAATGAAGATT  533

Query  541  TCCGGGCTTGATTTTGCTGCGGTGGAAGAGGGACACATAAACTAAGACAGCTTAACTCTT  600
            ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct  534  TCCGGGCTTGATTTTGCTGTGGTGGAAGAGGAACACACAAACTAAGACAGCTTAACTCTT  593

Query  601  TCTTTTTGTGTATACATCATATTTGAATGCTCTTTGAGTCTTTGTTTCATATCGTAGAAC  660
            || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct  594  TCCTTTTGTGTATACATCGCATTTGAATGCTCTTTGAGTCTTTGTTTCATATCGTAGAAC  653

Query  661  ACAATTAACGCTTT  674
            |||||||| |||||
Sbjct  654  ACAATTAATGCTTT  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24970510635


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5