BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29290.1
Length=2095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484700 jgi|Araly1|484700|fgenesh2_kg.5__692__AT3G29290.1 2490 0.0
> Ahg484700 jgi|Araly1|484700|fgenesh2_kg.5__692__AT3G29290.1
Length=1743
Score = 2490 bits (1348), Expect = 0.0
Identities = 1562/1667 (94%), Gaps = 8/1667 (0%)
Strand=Plus/Plus
Query 281 TTGCTGCGTTTAGCTCTTCACTGTATTATCATGGGAGCTGTCTGGTTGAGTCATGTCTCT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGCTGCGTTTAGCTCTTCACTGTATTATCATGGGAGCTGTCTGGTTGAGTCATGTCTCT 60
Query 341 CAATTGGTTTGTGGATGTTATTTAATTGAGCAGAGCTCTTGTGTTTTGAGAACTTTTCAT 400
||||||| |||||||||||||| ||||||| |||||| |||| ||| |||||||| ||||
Sbjct 61 CAATTGGATTGTGGATGTTATTCAATTGAGAAGAGCTGTTGTCTTTGGAGAACTTCTCAT 120
Query 401 TGGTCTTTGAGTCACTCATTGA-ACTTTACATTGACCATGAAGCCTAAACGAAGGCGTCT 459
||||||||||||||||| || | ||||| |||||||||||||||| ||||||||||||||
Sbjct 121 TGGTCTTTGAGTCACTCGTT-AGACTTTGCATTGACCATGAAGCCGAAACGAAGGCGTCT 179
Query 460 AGGTGTAAAAATGGAGTCTTTTTCTTTGGCAACACCAAACATGTGTTTCAGGAAGGTGAG 519
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AGGTGTAAAAATGGAGTCTTTTTCTTTGGCAACACCAAAAATGTGTTTCAGGAAGGTGAG 239
Query 520 TAGTGAATTAGACAGTTCTTTCAACGGTGAAAATGTGGTTTGTGGTTTGGAACTGGAGGA 579
|||||||||||| || |||||||||||||||||| ||||| ||||| |||| |||||||
Sbjct 240 TAGTGAATTAGATAGCTCTTTCAACGGTGAAAATACGGTTTTTGGTTCGGAATTGGAGGA 299
Query 580 -GAAGACTGCAGGGGATAGGAATAGGATACATTTTCTAGAGGAGCGGAACGAAGAAACT- 637
||||| || || ||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 300 TGAAGA-TGGAGATGATAGGAATAGGATACATTTTTTAGAGGAGCGGAACGAAG-AGTTG 357
Query 638 TTATCGAAGAGGCTTCGGAAACTTAGCAGGTTGGATAAAGTCAGAAGCGCATTGGAGTTG 697
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTATCGAAGAGGCTTCTGAAACTTAGCAGGTTGGATAAAGTCAGAAGCGCATTGGAGTTG 417
Query 698 TTTGATTCTATGAGATTCTTGGGTTTACAACCTAATGCTCATGCCTGTAACTCTTTTCTC 757
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 TTTGATTCTATGAGATTCTTGGGTTTACAACCTAATGCTCATGCATGTAACTCTTTTCTC 477
Query 758 TCGTGCCTCTTGAGGAATGGAGATATTCAGAAAGCTTTTACCGTCTTTGAGTTCATGAGG 817
||||| |||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 478 TCGTGTCTCTTGAGGAATGGAGATGTACAGAAAGCCTTTACCGTCTTTGAGTTGATGAGG 537
Query 818 AAAAAGGAGAATGTTACAGGGCACACGTATAGTTTGATGTTGAAAGCTGTTGCAGAAGTT 877
|||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| |||
Sbjct 538 AAAAAGGAGAATGTCACAGGGCATACGTATAGCTTGATGTTGAAAGCTATTGCAGAGGTT 597
Query 878 AAGGGTTGCGAGTCTGCATTAAGAATGTTTAGAGAACTAGAAAGGGAGCCGAAACGTAGG 937
|| ||||| || |||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 598 AAAGGTTGTGATTCTGCACTAAGAATGTTTAGAGAACTAGAAAGGGAACCGAAATATAGG 657
Query 938 AGTTGTTTTGATGTGGTTCTATATAATACTGCGATTTCTCTATGTGGACGGATAAATAAT 997
|||| ||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 658 AGTTATTTCGATGTGGTTCTTTATAACACTGCTATTTCTCTATGTGGGCGGATAAATAAT 717
Query 998 GTGTATGAGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCATATTGGAACAGAG 1057
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 GTGTATGAGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCAAATTGGAACAGAG 777
Query 1058 ATTACATATTCTCTGCTTGTTAGCATTTTTGTTCGGTGTGGGAGAAGTGAATTGGCCCTT 1117
||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||| |||
Sbjct 778 ATTACGTATTCTCTGCTTATTAGCATTTTTGTTAGGTGTGGGAGAAGCGAATTGGCACTT 837
Query 1118 GATGTGTATGATGAGATGGTTAACAACAAGATATCTCTGAGAGAGGATGCAATGTATGCG 1177
|||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 838 GATGCGTATGATGAGATGGTTAACAACAAGATATCTCCAAGAGAAGATGCAATGTATGCG 897
Query 1178 ATGATAAGTGCGTGTACAAAGGAGGAAAAATGGGATTTGGCCTTAAAGATATTTCAGAGT 1237
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 ATGATAAGCGCGTGTACAAAGGAGGAAAAATGGGATTTGGCCCTAAAGATATTTCAGAGT 957
Query 1238 ATGTTAAAGAAAGGGATGAAGCCTAATCTTGTAGCTTGCAATACTTTGATAAACTCGCTG 1297
||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||
Sbjct 958 ATGTTAAAGAAAGGGATCAAGCCTAATCTTGTTGCGTGCAATACTTTGATAAATTCGCTG 1017
Query 1298 GGAAAGGCGGGTAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTTTAAAATCCTTGGGG 1357
||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1018 GGAAAGGCGGGCAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTGCAAAATCGTTGGGG 1077
Query 1358 CATAAACCAGACGAGTACACGTGGAATGCGCTGCTCACGGCTTTATACAAAGCAAACCGA 1417
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1078 CATAAACCAGACGAGTACACGTGGAATGCACTGCTCACAGCTTTATACAAAGCAAACCGA 1137
Query 1418 TATGAAGATGTTCTTCAGCTGTTTGATATGATAAGAAGCGAAAACCTGTGTTGTCTAAAT 1477
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 TATGAAGATGTTCTGCAGCTGTTTGATATGATAAGAAGCGAAAACCTGTGTTGTCTGAAT 1197
Query 1478 GAATATTTGTACAACACAGCTATGGTGTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCT 1537
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 GAATATTTGTACAATACAGCTATGGTTTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCT 1257
Query 1538 GTGAAGCTTTTGTATGAAATGGAAGGTTCGGGTTTAACAGTTTCAACTTCATCATATAAT 1597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GTGAAGCTTTTGTATGAAATGGAAGGTTCGGGGTTAACAGTTTCAACTTCATCATATAAT 1317
Query 1598 CTAGTGATAAGCGCTTGCGAAAAATCAAGAAAATCGAAAGTTGCATTGCTAGTATATGAG 1657
|| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1318 CTGGTGATAAGTGCTTGCGAAAAATCAAGGAAATCAAAAGTTGCATTGCTAGTGTATGAG 1377
Query 1658 CACATGGCTCAAAGGGATTGTAAGCCAAACACGTTTACTTATCTTTCGCTTGTAAGGAGT 1717
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 1378 CACATGGCTCAAAGGGATTGTAAGCCAAACACGTTTACTTATCTGTCACTGGTAAGAAGT 1437
Query 1718 TGTATTTGGGGTTCCCTTTGGGACGAGGTTGAAG-ATATCCTTAAGAAAGTGGAACCCGA 1776
||||| |||||||||||||||||||||||| ||| |||| || |||||||||||||||||
Sbjct 1438 TGTATCTGGGGTTCCCTTTGGGACGAGGTT-AAGGATATTCTAAAGAAAGTGGAACCCGA 1496
Query 1777 TGTATCGCTTTACAATGCAGCTATACATGGGATGTGTTTGAGACGCGAGTTCAAGTTTGC 1836
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1497 TGTGTCGCTTTACAACGCAGCTATACATGGGATGTGTTTAAGACGCGAGTTTAAGTTTGC 1556
Query 1837 AAAAGAGCTGTATGTCAAAATGAGAGAGATGGGTTTAGAACCGGATGGCAAAACCCGAGC 1896
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1557 AAAAGAACTGTATGTCAAAATGAGAGATATGGGTTTGGAACCGGATGGCAAAACCCGAGC 1616
Query 1897 TATGATGTTACAGAATTTGAAGAAACACCAAAAATAAGGTTATAATT 1943
||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1617 TATGATGTTACAGAACTTAAAGAAACACCAAAAATAAGGTTATAATT 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78808716905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5