BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29300.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484701 jgi|Araly1|484701|fgenesh2_kg.5__693__AT3G29300.1 911 0.0
> Ahg484701 jgi|Araly1|484701|fgenesh2_kg.5__693__AT3G29300.1
Length=651
Score = 911 bits (493), Expect = 0.0
Identities = 607/658 (92%), Gaps = 23/658 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGCAACATTGGTAATGGTAGTGAGCTTAGTCATGGTCTTAAGCTTAGTCTTAGTC 60
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCAGCTACAATGGTAATGGTAGTGAGCTTAGTCATGGTTTTAAGCTTAGTCTTAGTC 60
Query 61 CTACTAGCTGAACTCTACTGCTCTCTCTTACTCCGCCGCCGCCG---CCA-CAACTCCCT 116
|||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||
Sbjct 61 CTACTAGCTGAACTCTACTGTTCTCTCTTACTCCGCCGCCGTCGAAACCATC-ACTCCCT 119
Query 117 CAACCTCCCCATCACCACCACCGTCTCCACCGC--C-GCAAGAACCACCACAACTCTAAA 173
|||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 120 CAACCTCCCCAT---CACCACCGTCTCCACCGCAGCAACAACAACCACCACAACTCTAAA 176
Query 174 CCAAGCCATCTCCACAACAAGCAACGACAACACTTCACCATCTAACATCAATTCTTCTTC 233
||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 177 CCAAGTCATCTCCACCACAAGCAACGACAACACTTCACCATCAAACATCAATTCTTCTTC 236
Query 234 TCCTAATCCTCTCTACACAGGCGTTATTCAAACTCCAACCAAAACCCATTATAACCATGA 293
|| ||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||
Sbjct 237 ACCAAATCCTCTCTACACAGGTGTTCTTCAAACTCCAACCAAAACCCATTTTCACCATGA 296
Query 294 ACCATATTTACAAGCTTCTCTTGATCTGATTCAAGAAACCATTGTTAACGATTCT-GT-A 351
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 297 ACCATCTTTACAAGCTTCTCTTGATCTGATTCAAGAAACCATTGTTAACGATTCTGGTGA 356
Query 352 -GACAACTTCATCTACATATCAAACCCAATGTACTCGAACGACGCTACAAGTAAACCAAC 410
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 357 TAATAACTTCATCTACATATCAAACCCAATGTACTCAAACGAAGCTACAAGTAAACCAAC 416
Query 411 CACACCATTTGAAACCCCTGAGTCTTCACCGTCACGTCTTGAGACCGGTGAGTCATCATC 470
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 417 CACACCGTTTGAAACCCCTGAGTCTTCACCGTCACGGCTTGAAACCGGTGAGTCATCATC 476
Query 471 CTCTTCTTCCGGC---GAAGAAGATAACGATCATATAATCGAAGTTTCAACGCCAACATT 527
|||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 477 GTCTTCTTCCGGCGAGGAAGAAGATAACG---ATATAATCGAAGTTTCAACACCAACATT 533
Query 528 AACTCCAATGAAGGATCTACCTGAAAAGGCATGCTCTGTTTCACTAAAAAATGTGGAAAC 587
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 534 AGCTCCAATGAAGGATCTACCTGAAAAAGCATGCTCTGTTTCACTAAAAAATGTGGAAAC 593
Query 588 TTCTGCTAGTGAATCAAA--C-TCGTCTGGTTCGCCGTATACTTCACCGTCGTGGTAG 642
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 594 TTCTGCTAGTGAATCAAATTCGTCGTCTGGTTCGCCGTATACTTCACCGTCGTGGTAG 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5