BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29310.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936746 jgi|Araly1|936746|scaffold_500937.1 1243 0.0
> Ahg936746 jgi|Araly1|936746|scaffold_500937.1
Length=1796
Score = 1243 bits (673), Expect = 0.0
Identities = 865/952 (91%), Gaps = 35/952 (4%)
Strand=Plus/Plus
Query 813 TTTTGGTACTTCTAGTGAGGATGAAGATAACAATGCAGACATGAGTGATGATAGTGAAGA 872
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 852 TTTTGTTACTTCTAGTGAGGATGAAGATAACAATGCAGACATGACTGATGATAGTGAAGA 911
Query 873 AGTTCCAGTGAGTTCTATTGATAAGAGAAAGGTTGCTAGTTCTAAGTCTAGAACCGGGGT 932
||| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 912 AGTCCCAGTGAGTTCTAGTGATAAGAAAAAGGTTGCTAGCTCTAAGTCTAGAACCGGGCA 971
Query 933 TGTGATAGAAGGTGATGTAGTGAAGCCTCCGGTTATGAAATTTGTTGTATTGGACAAGAA 992
||| ||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 972 TGTAATAAAAGGCAATGTAGTGAAGACTCCGGTTAGGAAATTTGTTGTATTGGACAAGAA 1031
Query 993 CAGGAATGTGTGTCAGGTATATGGAAATAGGCATGATCTAACTTCGAGTGCAGAGGATGA 1052
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1032 CAGGAATTTGTGTCAGGTATATGGAAATAGGCATGATCTAACTTCGAGTGCCGAGGATGA 1091
Query 1053 TTCAGTTGATGGTGACGAGGAAACCCTTGTGATGTCCAGGGATAATGGAAGGAAGCAGAG 1112
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||
Sbjct 1092 TTCAGTTGATGGTGACGAGGAAATCCTCGTGATGTCCAGGGGTAATGGAAGGAGGCAGAG 1151
Query 1113 TTTGAAAGCTAGGAACGGGGTTTCGGTGAAAGGAGGTGGAGGGAAGACAACTCGGGTGGT 1172
||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1152 TTTAAAAACTAGGAACGGGGTTTTGGTGAAAGGAAATGGAGGGAAGACAACTCGGGTGGT 1211
Query 1173 GAAAACTGTGAGTTTTGATGAGAATGGGAATGTATGTAAGGTTTATGGAGATACACATGA 1232
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 1212 GAAAACTGTGAGCTTTGATGAGAATGGGAATGTATGTAAGGTTTTTGGAGATTCAGATGA 1271
Query 1233 CCTAACTTCTAGTGCAGAGGATGATGATTCAGTTGACGTTGGAGAGGAAACCCTCGTGAT 1292
|||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||
Sbjct 1272 CCTAACTTCTAGTGCAGA-G--GATGATTCAGTTGATGACGGAGAGGAAACCCTCGTGAT 1328
Query 1293 GTGTAGGGATGAGGGAAAGAGGCGTAGTTCGAAAACTGGGAGCAGGGTTTTGGTGAAAGG 1352
|| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1329 GTCCAGGGATGATGGAAAGAGGCATAGTTCGAAAACTGGGAACAGGGTTTTGGTGAAAGG 1388
Query 1353 AAGTGGAGGAAAAACAAACCGTGTGGTGAAAACTGTGAGCTTTGACGAGAATGGGAACGT 1412
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1389 AAGTGGAGGAAAAACAAACCGTGTGGTGAAAACTGTGAGCTTTGATGAGAATGGGAATGT 1448
Query 1413 CTATAAGGCTTATGGAGATACGCCAGAGTCAAGTATTATAAGTGAGGAAGATGACTCGAC 1472
||||||| |||||||||||||||||||||||| || | | |||||||||||||||| ||
Sbjct 1449 ATATAAGGTTTATGGAGATACGCCAGAGTCAAGCAT-A-A-GTGAGGAAGATGACTCAAC 1505
Query 1473 AAGCGGATCAAATGAAGGAAATGGAGAAGAGAAAGGGAATGTGAATGAGGTTGAGGAAAT 1532
|||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1506 AAGCGGATCAAACGATGGAAATGGAGATGAGAAAGGGAATGCGAATGAGGTTGAGGAAAT 1565
Query 1533 CAAATACGTTCCCAAGGAAAACGAGAGCTTTgaagaagaagaa---gaa-aa-a-gaaaC 1586
|||||||||||||||||||||||||||||||||||| |||||| ||| || | |||||
Sbjct 1566 CAAATACGTTCCCAAGGAAAACGAGAGCTTTGAAGATGAAGAAAAAGAAGAAGAAGAAAC 1625
Query 1587 TGATTCTGAAAATGAAGTTTCTTCTTCAGAGGGCAGTGAA-GG--G---G-A-C-AA--A 1635
|||||||||||||||||||||||||||||||||||||||| || | | | | || |
Sbjct 1626 TGATTCTGAAAATGAAGTTTCTTCTTCAGAGGGCAGTGAAAGGAAGACAGGAGCGAACCA 1685
Query 1636 --A-G-A-GTTACTAAAAA-G-GAGG----TCCAGCATCAAAAAGGAAGCTTAATGTTCT 1684
| | | || || ||| | | |||| |||||| | |||||||||||||||||||||
Sbjct 1686 TCAAGGAAGTAAC-AAACACGAGAGGGAAATCCAGCTTGAAAAAGGAAGCTTAATGTTCT 1744
Query 1685 CTCCTCCATTGCCACTAAAAATGGAGCCTTGACCAGTGAGTCATGAAAGAAT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 CTCCTCCATTGCCACTAAAAATGGAGCCTTGACCAGTGAGTCATGAAAGAAT 1796
Score = 1005 bits (544), Expect = 0.0
Identities = 721/802 (90%), Gaps = 29/802 (4%)
Strand=Plus/Plus
Query 43 GACTCCGCCGTCGATTACATGGCTTCTcaccaccaccacaaccataac--c-acgtgtgc 99
|||||||||||||||| |||||||||||||||||||||| |||| ||| | ||| ||||
Sbjct 4 GACTCCGCCGTCGATTCCATGGCTTCTCACCACCACCACCACCACAACAACAACGGGTGC 63
Query 100 tcacgccaccaaaaccaccacaataacaccCCTCAATTCGCCACGTCACCAAACTGCTGC 159
||||||||||||||||||||||||| | ||||| | ||||||||||| || ||||||||
Sbjct 64 TCACGCCACCAAAACCACCACAATAGTATCCCTCTAGTCGCCACGTCAACACACTGCTGC 123
Query 160 A-ACAAATCCAACCACCCTTCT---CCGCCG-C-CAG-CGGAGGATAATCTTCTCCATC- 211
| ||||| ||||||||||||| |||||| | | | |||||||||||||| ||||||
Sbjct 124 ACCCAAAT-CAACCACCCTTCTCCGCCGCCGCCGCCGCCGGAGGATAATCTTGTCCATCT 182
Query 212 TCGTCGCTACTTACCTCCAAAATCATCAACAAGAAACTCAATGCTCCTGCGAGACTTCTT 271
|| |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 183 TC-TCGCAACTTACCTTCAAAATCATCAACAAGAAACTCAATGTTCCTGCGAAACTTCGT 241
Query 272 GTCAAAACTTCAATGTTATTAGAAGTCAGA-ACCGTGTTTTGCGTCAGCATAAGAATGTT 330
||||||||||||||||||||||| |||| | ||||||||||| ||||||| |||||||||
Sbjct 242 GTCAAAACTTCAATGTTATTAGAGGTCA-ACACCGTGTTTTGGGTCAGCAAAAGAATGTT 300
Query 331 CCACGAGAATACGACCAAGTTGTTCTGTCTTGTCTTCTCCGCAAAATCGATGATCTTGAA 390
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 301 CCACGAGAATACGACCAAGTTGTTATGTCTTGTCTTCTCCGCAAAATCAATGATCTTGAA 360
Query 391 TCTTCACTCAACAAGTTTTCATCTTTCTATGA-CAAACGTCGAGATCGACACTCAACACT 449
|| || ||||||||||||||| |||||||||| | || |||||||||||||||| |||||
Sbjct 361 TCGTCCCTCAACAAGTTTTCAGCTTTCTATGAGC-AATGTCGAGATCGACACTCTACACT 419
Query 450 AAGAGATTCGGCGGCGCGTGTTATTCAAACCCATTTCCGCTCTTACCTTGTTCACAGATC 509
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGAGATACGGCGGCGCGTGTTATTCAAACCCATTTCCGCTCTTACCTTGTTCACAGATC 479
Query 510 CATATCCTTTAGACAACTCAAGGAGCTTGCAATGATAAAAGCTAGCTTCTTGTCTCTTAA 569
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 480 CATATCCTTCAGACAACTCAAGGAGCTTGCAATGATAAAATCTAGCTTCTTGTCTCTCAA 539
Query 570 ATCTTCGGTTTCGGGGAAACTCATTTTCCCTTTCAAAGTTGTTTCTCGGAAAGCTACAGA 629
|||||| ||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 540 ATCTTCAGTTTCAGGGAAACCCATTTTCCCTTTCAAGGTTGTATCTCGGAAAGCTACAGA 599
Query 630 CTTGCTTCTTCAACTGGATTCAATTCAGGGTAGGATTGATCCAATGATAAGAAGTAGTAA 689
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 CTTGCTTCTTCGACTGGATTCAATTCAGGGTAGGATTGATCCAATGATACGAAGTAGTAA 659
Query 690 GAGATCATTGAGCAGAGATTTGGTGAGGTTTGTGCAATATGTTGATGATTGTGTTGTTAA 749
|||||||||||||||||||||||||| |||| |||| || |||||||||||| ||||||
Sbjct 660 GAGATCATTGAGCAGAGATTTGGTGAAGTTTTTGCAGTACATTGATGATTGTGCTGTTAA 719
Query 750 AAGGTATGGTTTTGTTGTTAAGTCTG------G--T-AGT-G--GCATCAAACTTAATGG 797
||||| || ||||||| |||||||| | | ||| | ||| ||||||||||||
Sbjct 720 AAGGTGTGAATTTGTTGCTAAGTCTGCAATAAGAGTGAGTAGACGCAGCAAACTTAATGG 779
Query 798 CAAAAAGCCTCAGGGTTTTGGT 819
|||||||||||||||||||||
Sbjct 780 GAAAAAGCCTCAGGGTTTTGGT 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5