BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29320.1
Length=3180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323006 jgi|Araly1|323006|fgenesh1_pm.C_scaffold_5000550 2673 0.0
Ahg323007 jgi|Araly1|323007|fgenesh1_pm.C_scaffold_5000551 145 2e-33
> Ahg323006 jgi|Araly1|323006|fgenesh1_pm.C_scaffold_5000550
Length=2850
Score = 2673 bits (1447), Expect = 0.0
Identities = 1631/1722 (95%), Gaps = 4/1722 (0%)
Strand=Plus/Plus
Query 1232 GTCAACTGGGAAGAATTTCCAGAGAAGGTTGCAGTGCAGATGAATGACACTCACCCTACC 1291
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GTCAACTGGGAAGAA-TCCCAGAGAAGGTTGCAGTGCAGATGAATGACACTCACCCTACT 1191
Query 1292 CTATGCATTCCTGAGCTAATGAGGATTCTAATGGATTTAAAAGGACTAAGCTGGGAAGAC 1351
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1192 CTATGCATTCCCGAGCTAATGAGGATTCTAATGGATTTGAAAGGACTAAGCTGGGAGGAT 1251
Query 1352 GCTTGGAAAATCACACAAAGGACTGTGGCATACACAAACCATACAGTCTTGCCTGAGGCA 1411
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCTTGGAAAATTACACAAAGGACCGTGGCATACACAAACCATACAGTCTTGCCTGAGGCA 1311
Query 1412 CTGGAGAAGTGGAGTTTAGAACTCATGGAGAAATTGCTTCCTCGTCATGTGGAGATTATC 1471
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1312 CTGGAGAAGTGGAGTTTAGAACTTATGGAGAAATTGCTTCCTCGTCATGTAGAGATTATA 1371
Query 1472 GAAAAGATTGATGAGGAGCTAGTTCGCACAATTGTTTCAGAGTATGGCACCGCGGATCCT 1531
||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1372 GAAAAGATTGACGAGGAGCTAGTTCGCACAATTGTCTCTGAGTATGGCACTGCGGATCCT 1431
Query 1532 GACTTACTTGAAGAAAAACTGAAGGCAATGAGGATCTTGGAAAATGTCGAGTTGCCTTCT 1591
|||||||| ||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1432 GACTTACTCGAAGAGAAACTGAAGGCAATGAGGATCTTAGAAAACGTTGAGTTGCCTTCT 1491
Query 1592 GCCTTTGCAGATGTGATCGTGAAGCCGGTGAACAAACCAGTTACTGCAAAAGATGCTCAA 1651
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 1492 GCCTTTGCAGATGTGATCGTGAAGCCGGAGAGCAAACCAGTAACTGCAAAAGATGCTCAA 1551
Query 1652 AATGGCGTGAAAACGGAACAAGAAGAGGAAAAAACTGCTGGAGAGGAAGAGGAAGACGAA 1711
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1552 AATGGCGTGAAAACGGAACAAGAAGAGGAAAAAATTGCTGGCGAGGAAGAGGAAGAGGAA 1611
Query 1712 GTTATCCCAGAACCAACAGTAGAACCCCCCAAGATGGTCCGTATGGCCAACCTTGCTGTT 1771
|||||||||||||| | | || |||| || ||||||||||||||||||||||||||||||
Sbjct 1612 GTTATCCCAGAACC-A-A-TAAAACCACCAAAGATGGTCCGTATGGCCAACCTTGCTGTT 1668
Query 1772 GTGGGTGGTCATGCTGTAAATGGCGTTGCAGAGATACACAGTGAAATAGTGAAGCAGGAC 1831
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1669 GTGGGTGGTCATGCTGTAAATGGGGTTGCAGAGATACACAGTGAAATAGTGAAGCAGGAT 1728
Query 1832 GTGTTTAATGATTTCGTACAGTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTA 1891
||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1729 GTGTTTAATGATTTCGTTCAGTTGTGGCCGGAAAAATTTCAGAATAAAACCAATGGAGTA 1788
Query 1892 ACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGG 1951
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1789 ACACCAAGGCGATGGATTCGTTTTTGCAACCCATATCTAAGTGATACTATAACTAACTGG 1848
Query 1952 ATAGGCACAGAAGACTGGGTCTTAAATACCGAAAAGGTTGCGGAACTAAGAAAGTTTGCA 2011
|||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||
Sbjct 1849 ATAGGCACAGAAGACTGGGTCTTAAACACCGAAAAGCTTGCGGAGCTGAGAAAGTTTGCA 1908
Query 2012 GATAATGAAGATCTCCAATCTGAGTGGAGGGCAGCAAAGAAGAAGAACAAGTTGAAGGTT 2071
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 1909 GATAATGAAGATCTTCAATCCGAGTGGAGGACAGCAAAGAAGAAGAACAAGTTAAAGGTT 1968
Query 2072 GTATCACTTATCAAGGAAAGAACTGGATATACTGTCAGCCCCGATGCAATGTTCGACATT 2131
||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1969 GTAGCACTTATCAAGGAAAGAACGGGATACACTGTCAGCCCGGATGCAATGTTCGACATT 2028
Query 2132 CAGATCAAGCGTATACATGAGTACAAGCGACAACTGCTAAATATCTTGGGAATTGTTTAC 2191
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2029 CAGATCAAGCGTATCCACGAGTACAAGCGACAACTGCTTAATATCTTGGGAATTGTTTAC 2088
Query 2192 CGCTACAAAAAGATGAAGGAAATGAGTGCTAGTGAGAGAGAGAAAGCATTTGTTCCAAGA 2251
||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||
Sbjct 2089 CGCTACAAAAAGATGAAGGAAATGAGTGCCAGTGAGAGGGAGAAGGCATATGTTCCAAGA 2148
Query 2252 GTTTGCATATTTGGGGGAAAAGCATTTGCCACATATGTGCAAGCTAAGAGAATTGTTAAA 2311
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 2149 GTTTGCATATTTGGAGGAAAAGCATTCGCCACATATGTGCAAGCTAAGAGGATTGTGAAA 2208
Query 2312 TTTATCACAGATGTTGCGTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAG 2371
|| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2209 TTCATCACAGATGTTGCATCTACAATTAACCATGATCTGGAAATAGGTGACCTGCTTAAG 2268
Query 2372 GTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCTGAATTGCTCATTCCAGCAAGTGAG 2431
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 2269 GTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCCGAACTGCTCATTCCAGCAAGTGAG 2328
Query 2432 CTTTCTCAGCACATCAGTACTGCTGGGATGGAAGCTAGTGGGACAAGCAACATGAAATTT 2491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2329 CTTTCTCAGCACATCAGTACCGCTGGGATGGAAGCTAGTGGGACAAGCAACATGAAATTT 2388
Query 2492 TCGATGAACGGTTGCGTTTTGATTGGAACCTTGGATGGGGCGAATGTCGAGATTAGAGAA 2551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 TCGATGAACGGTTGCGTTTTGATTGGAACCTTGGATGGGGCGAATGTCGAGATTAGAGAA 2448
Query 2552 GAAGTTGGAGAAGAAAATTTCTTCCTCTTTGGTGCCAAAGCTGATCAGATTGTGAACCTC 2611
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2449 GAAGTAGGAGAAGAAAATTTCTTCCTTTTTGGTGCCAAAGCTGATGAGATTGTGAACCTC 2508
Query 2612 AGGAAGGAGAGAGCAGAGGGAAAGTTTGTTCCCGATCCTACTTTTGAAGAAGTCAAGAAG 2671
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2509 AGGAAGGAGAGAGCAGAGGGAAAGTTTGTTCCAGATCCTACTTTTGAAGAAGTCAAGAAG 2568
Query 2672 TTCGTTGGAAGCGGCGTCTTTGGCTCAAATAGCTATGATGAACTAATCGGCTCTTTGGAA 2731
|||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2569 TTCGTTAGAAGCGGTGTCTTTGGCTCAAACAGCTATGATGAACTAATTGGCTCTTTGGAA 2628
Query 2732 GGAAACGAAGGCTTTGGACGAGCGGATTACTTCCTAGTTGGCAAAGACTTTCCTAGTTAC 2791
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2629 GGAAATGAAGGCTTTGGTCGAGCGGATTACTTCCTCGTTGGCAAAGACTTTCCTAGTTAC 2688
Query 2792 ATCGAATGCCAAGAAAAAGTCGACGAGGCATACCGAGACCAGAAAAGATGGACGAGAATG 2851
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2689 ATTGAATGTCAAGAAAAAGTCGACGAGGCATACCGGGACCAGAAAAGATGGACGAGAATG 2748
Query 2852 TCAATAATGAACACAGCAGGTTCATTCAAGTTTAGCAGTGACCGGACGATCCACGAATAC 2911
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2749 TCAATCTTGAACACAGCAGGTTCATTCAAGTTTAGCAGTGACCGGACGATCCATGAATAC 2808
Query 2912 GCCAAAGACATATGGAATATTAAGCAAGTGGAACTTCCATGA 2953
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2809 GCCAAAGACATTTGGAATATTAAGCAAGTCGAACTTCCATGA 2850
Score = 1753 bits (949), Expect = 0.0
Identities = 1075/1136 (95%), Gaps = 7/1136 (1%)
Strand=Plus/Plus
Query 65 ATGGATACGATGCGAATCTCCGGTGTATCAACCGGAGCTGAGGTTTTAATACAATGCAAT 124
|||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 1 ATGGATACGATGCGTATCTCCGGTGTATCGACCGGAGCTGAGATTTTAGTACAATGCAAT 60
Query 125 TCCTTATCAAGCCTCGTTTCTCGTCGTTGCGACGACGGAAAATGGCGAACGAGAATGTTT 184
|||||||| ||||||||||||||||||||||||||||||| || | |||| |||||||||
Sbjct 61 TCCTTATCTAGCCTCGTTTCTCGTCGTTGCGACGACGGAAGATTGAGAACAAGAATGTTT 120
Query 185 CCGGCGAGAAACAGAGACTTGCGTCCATCGCCGACGAGAAGATCCTTTTTGTCGGTGAAA 244
|||||||||| |||| ||| ||||||||||||||||||||| || ||||| |||||||||
Sbjct 121 CCGGCGAGAAGCAGAAACTGGCGTCCATCGCCGACGAGAAGGTCGTTTTTATCGGTGAAA 180
Query 245 TCTATCTCTAGCGAACCGAAA-GCCAAAGTAACCGACGCAGTTCTCGATTCCGAACAAGA 303
||| ||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||
Sbjct 181 TCTGTCTCTAGCGAACC-AAAGGCGAAAGTAACCGATGCAGTTCTCGATTCCGAACAAGA 239
Query 304 AGTGTTTATTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAGCTTCGAGTAT 363
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTG--T-TTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAGCTTCGAGTAT 296
Query 364 CAAGTACCACGCGGAGTTTACGCCATTGTTTTCACCGGAGAAGTTTGAGTTGCCAAAGGC 423
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 CAAGTACCATGCTGAGTTTACGCCATTGTTTTCTCCGGAGAAGTTTGAGTTGCCAAAGGC 356
Query 424 GTTCTTT-GCGACTGCGCAAAGTGTTAGAGATGCTTTGATCATGAATTGGAATGCAACTT 482
||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 GTT-TTTCGCGACTGCGCAGAGTGTTAGAGACGCTTTGATCATGAATTGGAATGCAACTT 415
Query 483 ATGAGTATTACAACAGAGTGAATGTGAAACAAGCGTATTATTTGTCAATGGAGTTTTTGC 542
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 ATGAGTATTACAATAGGGTGAATGTGAAACAGGCGTATTATTTGTCAATGGAGTTTTTGC 475
Query 543 AGGGTAGAGCCTTATCGAATGCCGTGGGTAACCTTGGGCTTAATAGCGCTTATGGTGATG 602
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 476 AGGGTAGAGCCTTATCGAATGCAGTGGGTAATCTTGGGCTTAATAGCGCTTATGGTGACG 535
Query 603 CTTTGAAGAGGCTTGGTTTTGATTTGGAAAGCGTGGCTAGTCAGGAGCCAGATCCTGCAC 662
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 536 CTTTGAAGAGGCTTGGTTTTGATTTGGAAAGTGTAGCTAGTCAGGAGCCAGATCCTGCAC 595
Query 663 TTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGA 722
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 596 TTGGGAATGGTGGACTCGGGAGACTTGCTTCATGCTTTTTGGATTCCATGGCAACTTTGA 655
Query 723 ATTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTA 782
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 ATTATCCGGCATGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATCA 715
Query 783 CAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGCTAAGCAATCCTTGGGAAA 842
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 716 CAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGCTAAGTAATCCTTGGGAAA 775
Query 843 TAGTCAGAAATGATGTCTCATATCCTATTAAGTTCTATGGGAAAGTGGTTTTTGGATCAG 902
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 776 TAGTCAGAAATGATGTCTCATATCCTATTAAGTTCTATGGAAAAGTGGTTTTTGGATCAG 835
Query 903 ATGGTAAGAAACGGTGGATTGGTGGAGAAGACATTGTTGCTGTTGCTTATGATGTTCCTA 962
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 836 ATGGTAAGAAACGGTGGATTGGTGGAGAAGACATAGTGGCTGTTGCTTATGATGTTCCTA 895
Query 963 TACCTGGTTATAAAACTAAGACAACTATCAATCTGCGGCTCTGGTCAACAAAAGCTCCTT 1022
|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
Sbjct 896 TACCTGGTTATAAAACTAAGACTACTATCAATCTACGACTCTGGTCAACAAAAGCTCCAT 955
Query 1023 CCGAAGATTTTGATTTATCTTCATATAACTCTGGGAAGCATACTGAGGCAGCAGAAGCTC 1082
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 956 CAGAAGATTTTGATTTATCATCATATAACTCCGGGAAGCATACTGAGGCAGCAGAAGCTC 1015
Query 1083 TATTCAACGCTGAAAAGATTTGCTTCGTGCTTTACCCCGGAGATGAGTCAACTGAAGGAA 1142
||||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 1016 TATTCAATGCCGAAAAGATTTGTTTCGTGCTTTACCCTGGAGATGAGTCAAATGAAGGAA 1075
Query 1143 AGGCTCTTCGTCTGAAGCAACAATACACTCTGTGCTCAGCCTCGCTACAAGATATC 1198
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1076 AGGCTCTTCGTCTGAAGCAACAGTACACTCTGTGTTCAGCCTCGCTACAAGATATC 1131
> Ahg323007 jgi|Araly1|323007|fgenesh1_pm.C_scaffold_5000551
Length=663
Score = 145 bits (78), Expect = 2e-33
Identities = 96/104 (92%), Gaps = 3/104 (3%)
Strand=Plus/Minus
Query 3078 ATGTAATTTACAAG-GGCCTTCGCTGCCTTAGCGGCGTGCTTCTGACCGGCTAAATGATC 3136
|||| |||||| || || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 ATGT-ATTTAC-AGTGGTCTTCGCTGCCTTAGCGGCGTGCTTCTGACCGGCCAAATGATC 604
Query 3137 GTTGTAAACAATGTCGCTATTACAAACTACGTTGCATATTCTAC 3180
|||||||| |||||||||||||||||||||||||||||||||
Sbjct 603 ATTGTAAACCGTGTCGCTATTACAAACTACGTTGCATATTCTAC 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120136632730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5