BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29330.2

Length=765
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323007 jgi|Araly1|323007|fgenesh1_pm.C_scaffold_5000551           364    4e-100


> Ahg323007 jgi|Araly1|323007|fgenesh1_pm.C_scaffold_5000551
Length=663

 Score =  364 bits (197),  Expect = 4e-100
 Identities = 247/271 (91%), Gaps = 3/271 (1%)
 Strand=Plus/Plus

Query  468  TTCCTCTTTGTCTGGACCAACCGTTACAGCCCCTTTAATAGGACCACAAGAAAATCCGTG  527
            ||| |||||| |||||||||||||| ||  |||||||||||||||||||||||||||| |
Sbjct  393  TTCTTCTTTGCCTGGACCAACCGTTGCAATCCCTTTAATAGGACCACAAGAAAATCCGAG  452

Query  528  TACAAGCAAGGCTAGGAAGAGAGGTGCGGATTCAACAACAGAAGATCTAGAATCAAAGAG  587
            || ||||||||||||||||| ||||| ||| |||| |||||||||||||||| | |||||
Sbjct  453  TAAAAGCAAGGCTAGGAAGAAAGGTGTGGAATCAATAACAGAAGATCTAGAAACCAAGAG  512

Query  588  ACGGAGAGTCGTGGAATGCGGGGTGTCAAATGAGTCAATTAGATTGTGTAGAATATGCAA  647
            |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct  513  ACGGAGAGTCGTGGAATGTGGGGTGTCAAATGAGTCGATTAGACTGTGTAGAATATGCAA  572

Query  648  CGTAGTTTGTAATAGCGACATTGTTTACAACGATCATTTAGCCGGTCAGAAGCACGCCGC  707
            ||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||
Sbjct  573  CGTAGTTTGTAATAGCGACACGGTTTACAATGATCATTTGGCCGGTCAGAAGCACGCCGC  632

Query  708  TAAGGCAGCGAAGGCC-CTTGTAAATTACAT  737
            ||||||||||||| || || |||||| ||||
Sbjct  633  TAAGGCAGCGAAGACCACT-GTAAAT-ACAT  661


 Score =  241 bits (130),  Expect = 7e-63
 Identities = 175/197 (89%), Gaps = 2/197 (1%)
 Strand=Plus/Plus

Query  3    ATGGATTACAACAGTCAGTGGCAACAACCGCCGGCACCGGCGATACAGCCACCGGAAATG  62
            |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||
Sbjct  1    ATGGATTACAACAGCCAGTGGCAACAACCGCCGGCGCCGGCAATGCAGCCACCGGAAATG  60

Query  63   AATCAGTCGA-CGGCGGTTGATGCGTATTACGCTTCCTATTATGGTTACTACGCAAATCC  121
            |||||||| | |||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct  61   AATCAGTC-AGCGGCGGTTGATGCGTATTACGCTTCCTATTGTGCTCACTACGCAAATCC  119

Query  122  AAACCCTAGTTCCATCTCCGATCTCCAAACTTATGAATCCTCAGCTATTGCAATTCCACC  181
            | |||||| ||  |  |  |||||||||||  ||||||| | ||||||||||||||||||
Sbjct  120  AGACCCTAATTTTAAATTTGATCTCCAAACACATGAATCATTAGCTATTGCAATTCCACC  179

Query  182  ACCGCCTGGAGTTGTTG  198
            | |||||||||||||||
Sbjct  180  AGCGCCTGGAGTTGTTG  196


 Score =  119 bits (64),  Expect = 3e-26
 Identities = 125/152 (82%), Gaps = 13/152 (9%)
 Strand=Plus/Plus

Query  245  TACGACGCCGTATTATACTTTAGATATGAATGCTCAGCAGAACTCGGCTTGGCCTGA-TC  303
            ||||||||||||||| ||||| |||| |||||||   ||||||| ||||||||  || ||
Sbjct  198  TACGACGCCGTATTACACTTTGGATACGAATGCT---CAGAACTTGGCTTGGCAAGAGTC  254

Query  304  T-TATAGAGCAGTCTCATAGCATATACCCGCC---T---GATTTCTCTTGGACCGGCCAC  356
            | | | || |  ||||||||| ||||||||||   |   | |||| ||||||||||||||
Sbjct  255  TGT-TCGA-CCTTCTCATAGCTTATACCCGCCAGGTGCGGGTTTCCCTTGGACCGGCCAC  312

Query  357  ATAGTTCAAGCTCAACTTCCTGGAACGAAGAA  388
            ||||||||||||||||||||||||  ||||||
Sbjct  313  ATAGTTCAAGCTCAACTTCCTGGATTGAAGAA  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28210958580


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5