BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29340.1 Length=1953 Score E Sequences producing significant alignments: (Bits) Value Ahg323008 jgi|Araly1|323008|fgenesh1_pm.C_scaffold_5000552 933 0.0 Ahg936753 jgi|Araly1|936753|scaffold_500944.1 802 0.0 > Ahg323008 jgi|Araly1|323008|fgenesh1_pm.C_scaffold_5000552 Length=978 Score = 933 bits (505), Expect = 0.0 Identities = 862/1023 (84%), Gaps = 69/1023 (7%) Strand=Plus/Plus Query 955 ATGTCTCAGAGACTTCATGGTTGCAAAACATGCGGGAGAAAGTTTGGAACTTTAAAAGGT 1014 ||||||||||||||||||| |||||||| ||| || | |||||||| ||||||||||||| Sbjct 1 ATGTCTCAGAGACTTCATGTTTGCAAAAAATGTGGAAAAAAGTTTGCAACTTTAAAAGGT 60 Query 1015 GTGTATGGTCACCAGAGGATGCATTCTGGTAATCACAATAGAATCGAAGATGAGAATGGT 1074 || |||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||| Sbjct 61 GTCTATGGTCATCAGAGGATCCATTCTGGTAATTACAATAGAATCGAAGATGATAATGGT 120 Query 1075 TTGGAAAGGATTTGGGGTCTTAAGAAGAAGTCTAGGGTTTGCTCTGTTTCAGCTTTTGAT 1134 ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 121 TTGCAAAAGATTTGGGGTCTT---AAGAAGTCTAGGGTTTGCTCTGTTTCAGCTTCTGAT 177 Query 1135 CGATTCAAAGGATCTTCTTTTATGGCTGAGATTGAGAAACATGAGGTGATTGAAGCTGCA 1194 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 178 CGATTCAAAGGATCTTCTTTTATGACTGAGATTAAGAAACATGAGGTGATTGAAGCTGCA 237 Query 1195 TTGAACTTGGTTATGTTGTGTCA-AGGAGTTTATGACTTTGCTTCTATCAGTAATTTGCC 1253 |||||||||||||||||| | | | ||||||||||||||||||||||||| |||||||| Sbjct 238 ATGAACTTGGTTATGTTGTCT-AGACGAGTTTATGACTTTGCTTCTATCAGAAATTTGCC 296 Query 1254 TCTAGGTGATGGTTTCATGGATTTAGAGCTTAAACCTTGTCCTTTGAGAAGGAAACTACA 1313 ||| |||| || ||||||||||||||||||||||||| ||||||||||||| ||| | || Sbjct 297 TCTGGGTGTTGATTTCATGGATTTAGAGCTTAAACCTAGTCCTTTGAGAAGTAAATTGCA 356 Query 1314 GAAAAAATCTC-GCTCCAGTTATAAATG-CAGTATATGTGAGAAGAGTTTTGTGTGTTCT 1371 ||||||| ||| | || | |||||||| | |||||||||| |||||||||||||||||| Sbjct 357 GAAAAAAACTCAG-TCTACCTATAAATGTC-GTATATGTGACAAGAGTTTTGTGTGTTCT 414 Query 1372 CAAGCTCTTGGTAGTCACCAGAGACTTCACAGATGGA--AACTAGTGCCTAAACCTGAGT 1429 |||||||||||||| ||||| ||||||||||||| || || || || | | || || Sbjct 415 CAAGCTCTTGGTAGCCACCAAAGACTTCACAGATCGATGAA--AGGGCATTTAG-TGCGT 471 Query 1430 ACATTGAAGATGATAGTTCACTGTTAG-ACTCATCAGAAGCTAAGAAGATTGTTTCAAAA 1488 | | ||| || || || || || | | || | |||||||||| |||||| || || Sbjct 472 A-A---AAGG-GA--GTACATTG--AGGA-TGAT-A-AAGCTAAGAACATTGTTACACAA 519 Query 1489 CCATCAAGCTTTGAACATGCTCAGGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTA 1548 | |||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||| Sbjct 520 CGATCAAGCTTTGAACTTTCTCAAAAGGAGAAGATCTTACAACGTGTTGAGCCGAAACTA 579 Query 1549 GAGTTCCACGAACAGCTTGCTCACTCGGGTTTCGACAAGTTT-GATACTTGCAGTAAAAT 1607 ||||||||||||| |||| ||||||| ||||||||||| | | | |||||| |||||| Sbjct 580 GAGTTCCACGAACGGCTTACTCACTCTGGTTTCGACAAATCTAG-TACTTGTAGTAAAGC 638 Query 1608 CAGGTTCAGTGCATTACCTTCTCCTCCAGAAGCTAAGAAGATTGTTTCACAACCACCAAG 1667 || ||||||||||| |||||||||| | |||||||||||||||||||||||||| ||| Sbjct 639 CAATTTCAGTGCATTCCCTTCTCCTCTAAAAGCTAAGAAGATTGTTTCACAACCATCAAA 698 Query 1668 CTTTGAAGTCTCTGTGGATGAAAAGATCTTATATCGTGCTGAGCCA-AAACTAAACTTCA 1726 |||||||||||| ||||| |||||| ||||| ||||| ||||| | |||||| |||||| Sbjct 699 CTTTGAAGTCTCCGTGGACGAAAAGTTCTTACATCGTTTTGAGC-AGAAACTAGACTTCA 757 Query 1727 GCGAACCGCTTGCTCACTCGTGTTTCGACAATTCTAGTAG---C------------TATA 1771 || ||| |||||||||||| ||||||||||||||||||| | |||| Sbjct 758 GCAAACAACTTGCTCACTCGGGTTTCGACAATTCTAGTAGTTGCAGAAAAACCAACTATA 817 Query 1772 GAAGCATAATATGTGGCAAGAGTTTTGTGTGTTCACAAGCATTA-GGTGGTCACCAAACA 1830 || || ||||||||||||||||||||||||||| ||||| | | ||||||||||||| | Sbjct 818 GATTCAAAATATGTGGCAAGAGTTTTGTGTGTTCTCAAGC-TCAAGGTGGTCACCAAAAA 876 Query 1831 CTTCACAGATCGATTAAAGGCCAATTAGCGGGTACTGAAGATGGTAATTCACTCTCTGTG 1890 ||||||||||| | || | | | | | || | | | |||| || | ||| Sbjct 877 CTTCACAGATC--TGAA-G---A-T--G-G--TA---A---T--TCATTCTCTGGC-GTG 915 Query 1891 ACTGACTCAGAAGCTAGCAAGATTGTTGCACAACCATCAAGCTACAAGTCTCAGGGGATA 1950 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 916 ACTGACTCAGAAGCTAGCAAGATTGTTTCACAACCATCAAGCTACAAGTCTCAGGGGATA 975 Query 1951 TAA 1953 ||| Sbjct 976 TAA 978 Score = 99.0 bits (53), Expect = 1e-19 Identities = 95/115 (83%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 422 AAGCTAAGAAGATTGTTTCACAACCATCAAGCTTTAAAGTCTCTC-AGGAGGAGAAGTTC 480 |||||||||||||||||||||||||||||| |||| ||||||| | ||| || |||||| Sbjct 668 AAGCTAAGAAGATTGTTTCACAACCATCAAACTTTGAAGTCTC-CGTGGACGAAAAGTTC 726 Query 481 TTACATTGTGTGGAGTTA-AAACAAGACTTCAGTGAACCGCTTTCTCATTCGGGT 534 |||||| || | ||| | |||| ||||||||| ||| ||| |||| |||||| Sbjct 727 TTACATCGTTTTGAG-CAGAAACTAGACTTCAGCAAACAACTTGCTCACTCGGGT 780 > Ahg936753 jgi|Araly1|936753|scaffold_500944.1 Length=1432 Score = 802 bits (434), Expect = 0.0 Identities = 586/658 (89%), Gaps = 16/658 (2%) Strand=Plus/Plus Query 217 TCGAAACAAGAGTTCAGTGAAGT-ATATCCTCGGAAGAGTAAGTTGCAGAAAAGACCTGA 275 |||||||||| |||||| ||| | | ||||||||| ||||||| || ||||| |||| Sbjct 501 TCGAAACAAGGGTTCAGCGAACTGCT-TCCTCGGAATAGTAAGTCGCTGAAAATACCT-- 557 Query 276 GAGTAGTAGCTCCTGCTATGAATGCAAAG-TATGTGGCAAGATTTTTGGGTGTTATCGAG 334 ||| |||||||||||||||||||| ||| ||||||| |||| |||||||||||||| || Sbjct 558 GAG-AGTAGCTCCTGCTATGAATG-TAAGATATGTGGAAAGAGTTTTGGGTGTTATCAAG 615 Query 335 GTCTAGGTGGCCACACGAAACTTCACAGATCGACT-AAGAGGG-AATTAGCG-AGTACTC 391 |||||||||||||||| |||||||||||||||| | || |||| |||| ||| | |||| Sbjct 616 GTCTAGGTGGCCACACAAAACTTCACAGATCGA-TGAA-AGGGCAATTGGCGCA-TACTG 672 Query 392 AAGATGAGAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCACAACCATCAA 451 | ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 673 AGGATAATAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAACCATCAT 732 Query 452 GCTTTAAAGTCTCTCAGGAGGAGAAGTTCTTACATTGTGTGGAGTTAAAACAAGACTTCA 511 ||||| ||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| Sbjct 733 GCTTTGAAGTCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAGACTTCA 792 Query 512 GTGAACCGCTTTCTCATTCGGGTGCATTACCATCTACTCTGAGAAGTAAATTGCAGACAA 571 |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 793 GTGAACTGCTTTCTCATTCGGGTGCATTACCTTCTACCCTGAGAAGTAAATTGCAGAAAA 852 Query 572 AAACTCAGTGGAAATCAAGCTGTCATTGCAAAATATGTGGCAAGAGTTTTGTGTGTTCTC 631 |||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 853 AAACTCAGAGCAAATCAAGCTGTGATTGCAAAATATGTGGGAAGAGTTTTGTGTGTTCTC 912 Query 632 AAGGTTTAGGTAATCACAAAAGAGTTCACAGAGAGATTAGCGGGAAATTAGCGTGTAAAA 691 ||| | |||||||||||||||||||||| ||| ||| | |||||||||||| |||||| Sbjct 913 AAGCTCTAGGTAATCACAAAAGAGTTCATAGACCGATAAATGGGAAATTAGCGCGTAAAA 972 Query 692 GGAAGTACACTGAAGACTATAATCCATTCTCTGACTCATTAAAAGCTAAGAAGATTGTTA 751 ||||||| |||||||| ||||||||| | |||||||||||| ||||||||||||||||| Sbjct 973 GGAAGTATACTGAAGATTATAATCCACTGTCTGACTCATTAGAAGCTAAGAAGATTGTTT 1032 Query 752 AAAAACCATCAAGCTTTGAAGTCTCTCAGGAGGAGAAGATCTTACATTGTGTTGAGTTAA 811 |||||||||||||||| || |||||||| || || | |||||||||||||||||||| Sbjct 1033 CGGAACCATCAAGCTTTGAGGTTTCTCAGGA-GA-AA-AGCTTACATTGTGTTGAGTTAA 1089 Query 812 AACAAGACTTCGGTGAACTGCTTGCTCACTCGGGTTTCGACAAGTCTATTAGTTGCAG 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1090 AACAAGACTTCGGTGAACTGCTTGCTCACTCGGGTTTCGACAAGTCTATTAGTTGCAG 1147 Score = 220 bits (119), Expect = 2e-56 Identities = 429/569 (75%), Gaps = 60/569 (11%) Strand=Plus/Plus Query 296 AATGCAA-AGTATGTGGCAAGATTTTTGGGTGTTATCGAGGTCTAGGTGGCCACACGAA- 353 ||||||| | ||||||| ||||||||||||||||||| || | ||||||||||| | || Sbjct 289 AATGCAATA-TATGTGGAAAGATTTTTGGGTGTTATCAAGCTTTAGGTGGCCAC-CAAAG 346 Query 354 ACTTCACAGATCGACTAAGAGGG-AA-T------T---AGCGAG--TACTCAAGATGAGA 400 | |||||||| ||| | |||||| || | | || ||| |||| ||||||| | Sbjct 347 AGTTCACAGACCGA-TTAGAGGGAAACTAGCGCGTAAAAGGGAGTATACTGAAGATGATA 405 Query 401 ATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCACAACCATCAAGCTTTAAAG 460 ||||| |||| || |||||||| |||||||||||||||||| ||||||||| ||| ||| Sbjct 406 ATTCATTGTTTGAGTCATCAGATGCTAAGAAGATTGTTTCAAAACCATCAAATTTTGAAG 465 Query 461 TCTCTCAGGAGGAGAAGTTCTTACATTGTGTGGAGTTAAAACAAGACTTCAGTGAACCGC 520 ||||| ||| ||||||| ||||| ||||||| |||| ||||||| ||||| |||| || Sbjct 466 TCTCTAAGGTGGAGAAGATCTTAGATTGTGTTGAGTCGAAACAAGGGTTCAGCGAACTGC 525 Query 521 TTTCTCATTCGGGTGCATTACCATCTACTCTGAGAAGTAAATTGCAGACAAAAACTCAGT 580 ||| | || | | | || | | | |||| || | | || || | | ||| | Sbjct 526 -TTC-C--TC--G-G-AATAGTAAGT-CGCTGA-AAAT-ACCTG-AG--AGTAGCTC-CT 570 Query 581 GGAAATCAAGCTGTCATTGCAAAATATGTGGCAAGAGTTTTGTGTGTTCTCAAGGTTTAG 640 | | | || | || || |||||||| |||||||||| ||||| ||||||| ||| Sbjct 571 -G----CTA--TG--AATGTAAGATATGTGGAAAGAGTTTTGGGTGTTATCAAGGTCTAG 621 Query 641 GTAATCACA-AAAGAGTTCACAGAGAGATTAGCGGGAAATTAGCGTGTAAAAGGAAGTAC 699 || |||| ||| | |||||||| || | | || || | | || || | | Sbjct 622 GTGGCCACACAAA-ACTTCACAGATCGA-T-----G-AA--AG-G-GCAATTGG-CGCAT 668 Query 700 ACTGAAGACT-ATAATCCATTCTCT-GACTCATTAAAAGCTAAGAAGATTGTTAAAAAAC 757 ||||| || | ||||| || | | | ||||||| | ||||||||||||||||| | ||| Sbjct 669 ACTGAGGA-TAATAATTCACTGT-TAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAAC 726 Query 758 CATCAAGCTTTGAAGTCTCTCAGGAGGAGAAGATCTTACATTGTGTTGAGTTAAAACAAG 817 ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||||||||||| Sbjct 727 CATCATGCTTTGAAGTCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAG 786 Query 818 ACTTCGGTGAACTGCTTGCTCACTCGGGT 846 ||||| ||||||||||| |||| |||||| Sbjct 787 ACTTCAGTGAACTGCTTTCTCATTCGGGT 815 Score = 167 bits (90), Expect = 3e-40 Identities = 200/250 (80%), Gaps = 19/250 (8%) Strand=Plus/Plus Query 1335 TAAATGCAGTATATGT-GAGAAGAGTTTTGTGTGTTCTCAAGCTCTT-GGTAGTCACCAG 1392 |||||||| ||||||| || |||| ||||| ||||| ||||||| || ||| | ||||| Sbjct 287 TAAATGCAATATATGTGGA-AAGATTTTTGGGTGTTATCAAGCT-TTAGGTGGCCACCAA 344 Query 1393 AGACTTCAC--A--GA-T----GGAAACTAGTGCCTAAACCTGAGTACATTGAAGATGAT 1443 ||| ||||| | || | ||||||||| || |||| ||||| | |||||||||| Sbjct 345 AGAGTTCACAGACCGATTAGAGGGAAACTAGCGCGTAAAAGGGAGTATACTGAAGATGAT 404 Query 1444 AGTTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAAAACCATCAAGCTTTGAA 1503 | |||| |||| || |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 405 AATTCATTGTTTGAGTCATCAGATGCTAAGAAGATTGTTTCAAAACCATCAAATTTTGAA 464 Query 1504 CATGCTC-A-GGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTAGAGTTCCA-CGAA 1560 | ||| | || ||||||||||||| | ||||||||| |||||| || |||| | |||| Sbjct 465 G-T-CTCTAAGGTGGAGAAGATCTTAGATTGTGTTGAGTCGAAACAAGGGTTC-AGCGAA 521 Query 1561 CAGCTTGCTC 1570 | |||| ||| Sbjct 522 CTGCTTCCTC 531 Score = 145 bits (78), Expect = 1e-33 Identities = 205/263 (78%), Gaps = 21/263 (8%) Strand=Plus/Plus Query 1325 GCTCCAGTTATAAATG-CAGTATATGT-GAGAAGAGTTTTGTGTGTTCTCAAGCTCTTGG 1382 ||||| | ||| |||| || |||||| || |||||||||| ||||| ||||| ||| || Sbjct 565 GCTCCTGCTATGAATGTAAG-ATATGTGGA-AAGAGTTTTGGGTGTTATCAAGGTCTAGG 622 Query 1383 TAGTCAC-CAGAGACTTCACAGATGGA--AACTAGTGCCTAAACCT-GAGTACATTGAAG 1438 | | ||| || | ||||||||||| || || || | | || | | | | | ||| | Sbjct 623 TGGCCACACA-AAACTTCACAGATCGATGAA--AG-GGC--AA-TTGGCGCATACTGAGG 675 Query 1439 ATGATAGTTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAAAACCATCAAGCT 1498 || ||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 676 ATAATAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAACCATCATGCT 735 Query 1499 TTGAA--CATGCTCAGGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTAGAGTTCCA 1556 ||||| | | ||| ||| ||||| | |||||| ||||||||| |||| ||| ||| | Sbjct 736 TTGAAGTC-T-CTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAGACTTC-A 792 Query 1557 C-GAACAGCTTGCTCACTCGGGT 1578 |||| |||| |||| |||||| Sbjct 793 GTGAACTGCTTTCTCATTCGGGT 815 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73399902115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5