BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29340.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323008 jgi|Araly1|323008|fgenesh1_pm.C_scaffold_5000552 933 0.0
Ahg936753 jgi|Araly1|936753|scaffold_500944.1 802 0.0
> Ahg323008 jgi|Araly1|323008|fgenesh1_pm.C_scaffold_5000552
Length=978
Score = 933 bits (505), Expect = 0.0
Identities = 862/1023 (84%), Gaps = 69/1023 (7%)
Strand=Plus/Plus
Query 955 ATGTCTCAGAGACTTCATGGTTGCAAAACATGCGGGAGAAAGTTTGGAACTTTAAAAGGT 1014
||||||||||||||||||| |||||||| ||| || | |||||||| |||||||||||||
Sbjct 1 ATGTCTCAGAGACTTCATGTTTGCAAAAAATGTGGAAAAAAGTTTGCAACTTTAAAAGGT 60
Query 1015 GTGTATGGTCACCAGAGGATGCATTCTGGTAATCACAATAGAATCGAAGATGAGAATGGT 1074
|| |||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 61 GTCTATGGTCATCAGAGGATCCATTCTGGTAATTACAATAGAATCGAAGATGATAATGGT 120
Query 1075 TTGGAAAGGATTTGGGGTCTTAAGAAGAAGTCTAGGGTTTGCTCTGTTTCAGCTTTTGAT 1134
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 121 TTGCAAAAGATTTGGGGTCTT---AAGAAGTCTAGGGTTTGCTCTGTTTCAGCTTCTGAT 177
Query 1135 CGATTCAAAGGATCTTCTTTTATGGCTGAGATTGAGAAACATGAGGTGATTGAAGCTGCA 1194
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 178 CGATTCAAAGGATCTTCTTTTATGACTGAGATTAAGAAACATGAGGTGATTGAAGCTGCA 237
Query 1195 TTGAACTTGGTTATGTTGTGTCA-AGGAGTTTATGACTTTGCTTCTATCAGTAATTTGCC 1253
|||||||||||||||||| | | | ||||||||||||||||||||||||| ||||||||
Sbjct 238 ATGAACTTGGTTATGTTGTCT-AGACGAGTTTATGACTTTGCTTCTATCAGAAATTTGCC 296
Query 1254 TCTAGGTGATGGTTTCATGGATTTAGAGCTTAAACCTTGTCCTTTGAGAAGGAAACTACA 1313
||| |||| || ||||||||||||||||||||||||| ||||||||||||| ||| | ||
Sbjct 297 TCTGGGTGTTGATTTCATGGATTTAGAGCTTAAACCTAGTCCTTTGAGAAGTAAATTGCA 356
Query 1314 GAAAAAATCTC-GCTCCAGTTATAAATG-CAGTATATGTGAGAAGAGTTTTGTGTGTTCT 1371
||||||| ||| | || | |||||||| | |||||||||| ||||||||||||||||||
Sbjct 357 GAAAAAAACTCAG-TCTACCTATAAATGTC-GTATATGTGACAAGAGTTTTGTGTGTTCT 414
Query 1372 CAAGCTCTTGGTAGTCACCAGAGACTTCACAGATGGA--AACTAGTGCCTAAACCTGAGT 1429
|||||||||||||| ||||| ||||||||||||| || || || || | | || ||
Sbjct 415 CAAGCTCTTGGTAGCCACCAAAGACTTCACAGATCGATGAA--AGGGCATTTAG-TGCGT 471
Query 1430 ACATTGAAGATGATAGTTCACTGTTAG-ACTCATCAGAAGCTAAGAAGATTGTTTCAAAA 1488
| | ||| || || || || || | | || | |||||||||| |||||| || ||
Sbjct 472 A-A---AAGG-GA--GTACATTG--AGGA-TGAT-A-AAGCTAAGAACATTGTTACACAA 519
Query 1489 CCATCAAGCTTTGAACATGCTCAGGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTA 1548
| |||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||
Sbjct 520 CGATCAAGCTTTGAACTTTCTCAAAAGGAGAAGATCTTACAACGTGTTGAGCCGAAACTA 579
Query 1549 GAGTTCCACGAACAGCTTGCTCACTCGGGTTTCGACAAGTTT-GATACTTGCAGTAAAAT 1607
||||||||||||| |||| ||||||| ||||||||||| | | | |||||| ||||||
Sbjct 580 GAGTTCCACGAACGGCTTACTCACTCTGGTTTCGACAAATCTAG-TACTTGTAGTAAAGC 638
Query 1608 CAGGTTCAGTGCATTACCTTCTCCTCCAGAAGCTAAGAAGATTGTTTCACAACCACCAAG 1667
|| ||||||||||| |||||||||| | |||||||||||||||||||||||||| |||
Sbjct 639 CAATTTCAGTGCATTCCCTTCTCCTCTAAAAGCTAAGAAGATTGTTTCACAACCATCAAA 698
Query 1668 CTTTGAAGTCTCTGTGGATGAAAAGATCTTATATCGTGCTGAGCCA-AAACTAAACTTCA 1726
|||||||||||| ||||| |||||| ||||| ||||| ||||| | |||||| ||||||
Sbjct 699 CTTTGAAGTCTCCGTGGACGAAAAGTTCTTACATCGTTTTGAGC-AGAAACTAGACTTCA 757
Query 1727 GCGAACCGCTTGCTCACTCGTGTTTCGACAATTCTAGTAG---C------------TATA 1771
|| ||| |||||||||||| ||||||||||||||||||| | ||||
Sbjct 758 GCAAACAACTTGCTCACTCGGGTTTCGACAATTCTAGTAGTTGCAGAAAAACCAACTATA 817
Query 1772 GAAGCATAATATGTGGCAAGAGTTTTGTGTGTTCACAAGCATTA-GGTGGTCACCAAACA 1830
|| || ||||||||||||||||||||||||||| ||||| | | ||||||||||||| |
Sbjct 818 GATTCAAAATATGTGGCAAGAGTTTTGTGTGTTCTCAAGC-TCAAGGTGGTCACCAAAAA 876
Query 1831 CTTCACAGATCGATTAAAGGCCAATTAGCGGGTACTGAAGATGGTAATTCACTCTCTGTG 1890
||||||||||| | || | | | | | || | | | |||| || | |||
Sbjct 877 CTTCACAGATC--TGAA-G---A-T--G-G--TA---A---T--TCATTCTCTGGC-GTG 915
Query 1891 ACTGACTCAGAAGCTAGCAAGATTGTTGCACAACCATCAAGCTACAAGTCTCAGGGGATA 1950
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 916 ACTGACTCAGAAGCTAGCAAGATTGTTTCACAACCATCAAGCTACAAGTCTCAGGGGATA 975
Query 1951 TAA 1953
|||
Sbjct 976 TAA 978
Score = 99.0 bits (53), Expect = 1e-19
Identities = 95/115 (83%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 422 AAGCTAAGAAGATTGTTTCACAACCATCAAGCTTTAAAGTCTCTC-AGGAGGAGAAGTTC 480
|||||||||||||||||||||||||||||| |||| ||||||| | ||| || ||||||
Sbjct 668 AAGCTAAGAAGATTGTTTCACAACCATCAAACTTTGAAGTCTC-CGTGGACGAAAAGTTC 726
Query 481 TTACATTGTGTGGAGTTA-AAACAAGACTTCAGTGAACCGCTTTCTCATTCGGGT 534
|||||| || | ||| | |||| ||||||||| ||| ||| |||| ||||||
Sbjct 727 TTACATCGTTTTGAG-CAGAAACTAGACTTCAGCAAACAACTTGCTCACTCGGGT 780
> Ahg936753 jgi|Araly1|936753|scaffold_500944.1
Length=1432
Score = 802 bits (434), Expect = 0.0
Identities = 586/658 (89%), Gaps = 16/658 (2%)
Strand=Plus/Plus
Query 217 TCGAAACAAGAGTTCAGTGAAGT-ATATCCTCGGAAGAGTAAGTTGCAGAAAAGACCTGA 275
|||||||||| |||||| ||| | | ||||||||| ||||||| || ||||| ||||
Sbjct 501 TCGAAACAAGGGTTCAGCGAACTGCT-TCCTCGGAATAGTAAGTCGCTGAAAATACCT-- 557
Query 276 GAGTAGTAGCTCCTGCTATGAATGCAAAG-TATGTGGCAAGATTTTTGGGTGTTATCGAG 334
||| |||||||||||||||||||| ||| ||||||| |||| |||||||||||||| ||
Sbjct 558 GAG-AGTAGCTCCTGCTATGAATG-TAAGATATGTGGAAAGAGTTTTGGGTGTTATCAAG 615
Query 335 GTCTAGGTGGCCACACGAAACTTCACAGATCGACT-AAGAGGG-AATTAGCG-AGTACTC 391
|||||||||||||||| |||||||||||||||| | || |||| |||| ||| | ||||
Sbjct 616 GTCTAGGTGGCCACACAAAACTTCACAGATCGA-TGAA-AGGGCAATTGGCGCA-TACTG 672
Query 392 AAGATGAGAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCACAACCATCAA 451
| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 673 AGGATAATAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAACCATCAT 732
Query 452 GCTTTAAAGTCTCTCAGGAGGAGAAGTTCTTACATTGTGTGGAGTTAAAACAAGACTTCA 511
||||| ||||||||| ||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 733 GCTTTGAAGTCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAGACTTCA 792
Query 512 GTGAACCGCTTTCTCATTCGGGTGCATTACCATCTACTCTGAGAAGTAAATTGCAGACAA 571
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 793 GTGAACTGCTTTCTCATTCGGGTGCATTACCTTCTACCCTGAGAAGTAAATTGCAGAAAA 852
Query 572 AAACTCAGTGGAAATCAAGCTGTCATTGCAAAATATGTGGCAAGAGTTTTGTGTGTTCTC 631
|||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 853 AAACTCAGAGCAAATCAAGCTGTGATTGCAAAATATGTGGGAAGAGTTTTGTGTGTTCTC 912
Query 632 AAGGTTTAGGTAATCACAAAAGAGTTCACAGAGAGATTAGCGGGAAATTAGCGTGTAAAA 691
||| | |||||||||||||||||||||| ||| ||| | |||||||||||| ||||||
Sbjct 913 AAGCTCTAGGTAATCACAAAAGAGTTCATAGACCGATAAATGGGAAATTAGCGCGTAAAA 972
Query 692 GGAAGTACACTGAAGACTATAATCCATTCTCTGACTCATTAAAAGCTAAGAAGATTGTTA 751
||||||| |||||||| ||||||||| | |||||||||||| |||||||||||||||||
Sbjct 973 GGAAGTATACTGAAGATTATAATCCACTGTCTGACTCATTAGAAGCTAAGAAGATTGTTT 1032
Query 752 AAAAACCATCAAGCTTTGAAGTCTCTCAGGAGGAGAAGATCTTACATTGTGTTGAGTTAA 811
|||||||||||||||| || |||||||| || || | ||||||||||||||||||||
Sbjct 1033 CGGAACCATCAAGCTTTGAGGTTTCTCAGGA-GA-AA-AGCTTACATTGTGTTGAGTTAA 1089
Query 812 AACAAGACTTCGGTGAACTGCTTGCTCACTCGGGTTTCGACAAGTCTATTAGTTGCAG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AACAAGACTTCGGTGAACTGCTTGCTCACTCGGGTTTCGACAAGTCTATTAGTTGCAG 1147
Score = 220 bits (119), Expect = 2e-56
Identities = 429/569 (75%), Gaps = 60/569 (11%)
Strand=Plus/Plus
Query 296 AATGCAA-AGTATGTGGCAAGATTTTTGGGTGTTATCGAGGTCTAGGTGGCCACACGAA- 353
||||||| | ||||||| ||||||||||||||||||| || | ||||||||||| | ||
Sbjct 289 AATGCAATA-TATGTGGAAAGATTTTTGGGTGTTATCAAGCTTTAGGTGGCCAC-CAAAG 346
Query 354 ACTTCACAGATCGACTAAGAGGG-AA-T------T---AGCGAG--TACTCAAGATGAGA 400
| |||||||| ||| | |||||| || | | || ||| |||| ||||||| |
Sbjct 347 AGTTCACAGACCGA-TTAGAGGGAAACTAGCGCGTAAAAGGGAGTATACTGAAGATGATA 405
Query 401 ATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCACAACCATCAAGCTTTAAAG 460
||||| |||| || |||||||| |||||||||||||||||| ||||||||| ||| |||
Sbjct 406 ATTCATTGTTTGAGTCATCAGATGCTAAGAAGATTGTTTCAAAACCATCAAATTTTGAAG 465
Query 461 TCTCTCAGGAGGAGAAGTTCTTACATTGTGTGGAGTTAAAACAAGACTTCAGTGAACCGC 520
||||| ||| ||||||| ||||| ||||||| |||| ||||||| ||||| |||| ||
Sbjct 466 TCTCTAAGGTGGAGAAGATCTTAGATTGTGTTGAGTCGAAACAAGGGTTCAGCGAACTGC 525
Query 521 TTTCTCATTCGGGTGCATTACCATCTACTCTGAGAAGTAAATTGCAGACAAAAACTCAGT 580
||| | || | | | || | | | |||| || | | || || | | ||| |
Sbjct 526 -TTC-C--TC--G-G-AATAGTAAGT-CGCTGA-AAAT-ACCTG-AG--AGTAGCTC-CT 570
Query 581 GGAAATCAAGCTGTCATTGCAAAATATGTGGCAAGAGTTTTGTGTGTTCTCAAGGTTTAG 640
| | | || | || || |||||||| |||||||||| ||||| ||||||| |||
Sbjct 571 -G----CTA--TG--AATGTAAGATATGTGGAAAGAGTTTTGGGTGTTATCAAGGTCTAG 621
Query 641 GTAATCACA-AAAGAGTTCACAGAGAGATTAGCGGGAAATTAGCGTGTAAAAGGAAGTAC 699
|| |||| ||| | |||||||| || | | || || | | || || | |
Sbjct 622 GTGGCCACACAAA-ACTTCACAGATCGA-T-----G-AA--AG-G-GCAATTGG-CGCAT 668
Query 700 ACTGAAGACT-ATAATCCATTCTCT-GACTCATTAAAAGCTAAGAAGATTGTTAAAAAAC 757
||||| || | ||||| || | | | ||||||| | ||||||||||||||||| | |||
Sbjct 669 ACTGAGGA-TAATAATTCACTGT-TAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAAC 726
Query 758 CATCAAGCTTTGAAGTCTCTCAGGAGGAGAAGATCTTACATTGTGTTGAGTTAAAACAAG 817
||||| ||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||
Sbjct 727 CATCATGCTTTGAAGTCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAG 786
Query 818 ACTTCGGTGAACTGCTTGCTCACTCGGGT 846
||||| ||||||||||| |||| ||||||
Sbjct 787 ACTTCAGTGAACTGCTTTCTCATTCGGGT 815
Score = 167 bits (90), Expect = 3e-40
Identities = 200/250 (80%), Gaps = 19/250 (8%)
Strand=Plus/Plus
Query 1335 TAAATGCAGTATATGT-GAGAAGAGTTTTGTGTGTTCTCAAGCTCTT-GGTAGTCACCAG 1392
|||||||| ||||||| || |||| ||||| ||||| ||||||| || ||| | |||||
Sbjct 287 TAAATGCAATATATGTGGA-AAGATTTTTGGGTGTTATCAAGCT-TTAGGTGGCCACCAA 344
Query 1393 AGACTTCAC--A--GA-T----GGAAACTAGTGCCTAAACCTGAGTACATTGAAGATGAT 1443
||| ||||| | || | ||||||||| || |||| ||||| | ||||||||||
Sbjct 345 AGAGTTCACAGACCGATTAGAGGGAAACTAGCGCGTAAAAGGGAGTATACTGAAGATGAT 404
Query 1444 AGTTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAAAACCATCAAGCTTTGAA 1503
| |||| |||| || |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 405 AATTCATTGTTTGAGTCATCAGATGCTAAGAAGATTGTTTCAAAACCATCAAATTTTGAA 464
Query 1504 CATGCTC-A-GGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTAGAGTTCCA-CGAA 1560
| ||| | || ||||||||||||| | ||||||||| |||||| || |||| | ||||
Sbjct 465 G-T-CTCTAAGGTGGAGAAGATCTTAGATTGTGTTGAGTCGAAACAAGGGTTC-AGCGAA 521
Query 1561 CAGCTTGCTC 1570
| |||| |||
Sbjct 522 CTGCTTCCTC 531
Score = 145 bits (78), Expect = 1e-33
Identities = 205/263 (78%), Gaps = 21/263 (8%)
Strand=Plus/Plus
Query 1325 GCTCCAGTTATAAATG-CAGTATATGT-GAGAAGAGTTTTGTGTGTTCTCAAGCTCTTGG 1382
||||| | ||| |||| || |||||| || |||||||||| ||||| ||||| ||| ||
Sbjct 565 GCTCCTGCTATGAATGTAAG-ATATGTGGA-AAGAGTTTTGGGTGTTATCAAGGTCTAGG 622
Query 1383 TAGTCAC-CAGAGACTTCACAGATGGA--AACTAGTGCCTAAACCT-GAGTACATTGAAG 1438
| | ||| || | ||||||||||| || || || | | || | | | | | ||| |
Sbjct 623 TGGCCACACA-AAACTTCACAGATCGATGAA--AG-GGC--AA-TTGGCGCATACTGAGG 675
Query 1439 ATGATAGTTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAAAACCATCAAGCT 1498
|| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 676 ATAATAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAACCATCATGCT 735
Query 1499 TTGAA--CATGCTCAGGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTAGAGTTCCA 1556
||||| | | ||| ||| ||||| | |||||| ||||||||| |||| ||| ||| |
Sbjct 736 TTGAAGTC-T-CTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAGACTTC-A 792
Query 1557 C-GAACAGCTTGCTCACTCGGGT 1578
|||| |||| |||| ||||||
Sbjct 793 GTGAACTGCTTTCTCATTCGGGT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5