BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29350.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936754 jgi|Araly1|936754|scaffold_500945.1 800 0.0
Ahg494053 jgi|Araly1|494053|fgenesh2_kg.7__3486__AT5G39340.1 505 2e-142
> Ahg936754 jgi|Araly1|936754|scaffold_500945.1
Length=514
Score = 800 bits (433), Expect = 0.0
Identities = 489/515 (95%), Gaps = 7/515 (1%)
Strand=Plus/Plus
Query 105 ATCTCCGCTTCACTCTTC-TCATGGACGCTCTCATTGCTCAGCTTCAGAGACAATTTCGT 163
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTCCGCTTCACTC-TCGTCATGGACGCTCTCATTGCTCAGCTTCAGAGACAATTTCGT 59
Query 164 GATTACACCATTTCTCTCTACCAACAGGGGTTTTTGGATGATCAATTTACTGAGTTGAAA 223
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GATTACACCATTTCTCTCTACCAACAGGGTTTTTTGGATGATCAATTTACTGAGTTGAAA 119
Query 224 AAGCTACAAGATGATGGAAGTCCTGATTTTG-TGTCTGAAGTGCTTTCACTTTTCTTTGA 282
||||| ||||||||||||||||||||||||| || |||||||||| | |||||||||||
Sbjct 120 AAGCTTCAAGATGATGGAAGTCCTGATTTTGTTG-CTGAAGTGCTCACTCTTTTCTTTGA 178
Query 283 AGATTGTGTGAAGCTTATCAGTAACATGGCTAGAGCTTTGGAC---ACGACAGGAACTGT 339
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 179 AGATTGTGTGAAACTTATCAGTAACATGGCTAGAGCTTTGGACAAGACGACGGGAACTGT 238
Query 340 AGATTTTAGTCAGGTAGGTGCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGG 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGATTTTAGTCAGGTAGGTGCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGG 298
Query 400 TGCCAAGAGGGTCAAAACTTTGTGTGTTAGCTTCAAGGAATGTTGTGAAGCTAAGAACTA 459
|||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 TGCCAAAAGGGTCAAAGCGTTGTGTGTTAGCTTCAAGGAATATTGTGAAGCTAAGAACTA 358
Query 460 CGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGGCGTTAAAGACAAA 519
||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||
Sbjct 359 CGAAGGGTGTGTGAGATGTCTGCAGCAAGTAGATATCGAGTACAAGGCGCTAAAGACAAA 418
Query 520 GCTTCAAGATATGTTCAATCTTGAGAAACAGATCATTCAAGCTGGTGGTATAGTTCCTCA 579
|||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 419 GCTTCAAGATATGTTCAATCTTGAGAAACAAATCATTCAAGCTGGAGGTAGAGTTCCTCA 478
Query 580 AGTGGATATTAACTAAAGAGACTAGTCCATAAGAA 614
||||||||||||||||||||||||||||| |||||
Sbjct 479 AGTGGATATTAACTAAAGAGACTAGTCCAGAAGAA 513
> Ahg494053 jgi|Araly1|494053|fgenesh2_kg.7__3486__AT5G39340.1
Length=791
Score = 505 bits (273), Expect = 2e-142
Identities = 411/476 (86%), Gaps = 15/476 (3%)
Strand=Plus/Plus
Query 124 CATGGACGCTCTCATTGCTCAGCTT-CAGAGACAATTTCGTGATTACACCATTTCTCTCT 182
||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 82 CATGGACACACTCATTGCTCAG-TTACAGAGACAATTTCGTGATTACACCATTTCTCTCT 140
Query 183 ACCAACAGGGGTTTTTGGATGATCAATTTACTGAGTTGAAAAAGCTACAAGATG-ATGGA 241
| || ||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct 141 ATCACCAGGGGTTTTTGGATGATCAATTCACTGAATTGAAAAAGCTGCAAGATGAAT-GT 199
Query 242 AGTCCTGATTTTGTGTCTGAAG-TGCTTTCACTTTTCTTTGAAGATTGTGTGAAGCTTAT 300
||||||||||||||| |||| | || || | || ||||||||||| |||| |||||||||
Sbjct 200 AGTCCTGATTTTGTGGCTGAGGTTG-TTACTCTCTTCTTTGAAGACTGTGAGAAGCTTAT 258
Query 301 CAGTAACATGGCTAGAGCTTTGGA-CACGACAGGAACTGTAGATTT-TAGTCAGGTAGGT 358
|||||| ||||||||||| || || || |||||||| ||||||||| || | |||||||
Sbjct 259 CAGTAATATGGCTAGAGCGTTAGATCA-GACAGGAAATGTAGATTTCAAG-CTGGTAGGT 316
Query 359 GCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGGTGCCAAGAGGGTCAAAACT 418
| ||||| |||||| | || ||||||||||||||||||||||||||||| |||||| |
Sbjct 317 TCCAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGGTGCCAAGAGAGTCAAAGGT 376
Query 419 -TTGTGTGTTAGC-TTCAAGGAATGTTGTGAAGCTAAGAACTACGAAGGGTGTGTGAGAT 476
|| ||||||| | ||||||| ||||| || || ||||||| ||||||||||||||||
Sbjct 377 CTT-TGTGTTA-CACTCAAGGAGTGTTGCGACTCTCAGAACTATGAAGGGTGTGTGAGAT 434
Query 477 GTTTGCAGCAAGTGGATATTGAGTACAAGGCGTTAAAGACAAAGCTTCAAGATATGTTCA 536
||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||| |
Sbjct 435 GTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAAGCTTCAAGATTTGTTTA 494
Query 537 ATCTTGAGAAACAGATCATTCAAGCTGGTGGTATAGTTCCTCAAGTGGATAT-TAA 591
|||||||| ||||||| | ||||||||||||| | | ||||| |||||||| |||
Sbjct 495 ATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCAGGTGGATATATAA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5