BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29360.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936755 jgi|Araly1|936755|scaffold_500946.1 2564 0.0
Ahg947904 jgi|Araly1|947904|scaffold_704133.1 1434 0.0
Ahg488394 jgi|Araly1|488394|fgenesh2_kg.6__1528__AT5G15490.1 1181 0.0
Ahg927678 jgi|Araly1|927678|scaffold_300135.1 1147 0.0
> Ahg936755 jgi|Araly1|936755|scaffold_500946.1
Length=1732
Score = 2564 bits (1388), Expect = 0.0
Identities = 1580/1671 (95%), Gaps = 19/1671 (1%)
Strand=Plus/Plus
Query 54 AGAAGAAGTGAAAGATGGTGAAGATATGTTGTATTGGAGCTGGGTATGTTGGTGGACCAA 113
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 74 AGAAGCAGTGAAA-ATGGTGAAGATTTGTTGTATTGGAGCTGGGTATGTTGGTGGACCAA 132
Query 114 CAATGGCAGTGATTGCATTGAAATGTCCAGACGTTGAAGTAGCGGTTGTTGATATCTCTG 173
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CAATGGCAGTGATTGCTTTGAAATGTCCAGACGTTGAAGTAGCGGTTGTTGATATCTCTG 192
Query 174 TACCACGTATCAACGCTTGGAACAGTGA-CACGCTTCCGATTTACGAGCCTGGTCTTGAT 232
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 193 TACCACGTATCAACGCTTGGAACAGTGACCA-GCTTCCGATTTACGAGCCTGGTCTTGAT 251
Query 233 GATGTTGTGAAGCAATGCCGTGGCAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACAT 292
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 252 GATGTTGTGAAGCAATGCCGTGGAAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACAT 311
Query 293 GTTAGGGAAGCTGATATTGTGTTTGTTTCTGTCAACACACCGACTAAGACTAGAGGTCTT 352
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 312 GTTAGGGAAGCTGATATTGTGTTTGTTTCTGTCAATACACCGACGAAAACTAGAGGTCTT 371
Query 353 GGTGCTGGTAAAGCTGCGGATCTTACGTACTGGGAGAGCGCTGCGCGTATGATCGCTGAT 412
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 372 GGTGCTGGTAAAGCTGCGGATCTTACGTATTGGGAGAGCGCTGCACGTATGATCGCTGAT 431
Query 413 GTTTCGGTATCGGATAAGATTGTCGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAA 472
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 432 GTGTCGGTATCGGATAAGATTGTGGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAA 491
Query 473 GCTATTGAGAAGATTTTGACACATAACAGTAAAGGGATTAAGTTTCAGATTCTTTCGAAT 532
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 492 GCTATTGAGAAGATTTTGACACATAATAGCAAAGGGATTAAGTTTCAGATTCTTTCGAAT 551
Query 533 CCCGAGTTTTTGGCGGAAGGAACCGCGATTAAGGACCTATTTAATCCGGACCGTGTTCTT 592
|| |||||||||||||||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct 552 CCGGAGTTTTTGGCGGAAGGAACCGCGATCAAGGATCTTTTTAACCCTGACCGTGTTCTT 611
Query 593 ATCGGAGGGCGGGAAACCCCAGAAGGGTTTAAAGCGGTGCAGACTCTCAAGAATGTGTAT 652
|| ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 612 ATTGGAGGGCGGGAGACCCCGGAAGGGTTTAAAGCGGTGCAGACTCTCAAGGATGTGTAT 671
Query 653 GCACACTGGGTTCCTGAAGGCCAAATCATAACAACCAATCTCTGGTCTGCTGAGCTGTCC 712
|| || |||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 672 GCTCATTGGGTTCCTGAAGGCCAAATCATAACCACCAATCTATGGTCTGCTGAGCTTTCC 731
Query 713 AAGCTTGCGGCAAACGCTTTCTTGGCTCAAAGGATTTCATCAGTGAATGCTATGTCGGCT 772
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 732 AAGCTTGCAGCAAACGCTTTCTTGGCTCAAAGGATTTCATCTGTCAATGCTATGTCGGCT 791
Query 773 CTGTGTGAAGCCACAGGCGCAGATGTCACGCAAGTGTCTTACGCGGTTGGTACAGACTCA 832
| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 792 TTATGTGAAGCCACTGGTGCAGATGTCACGCAAGTGTCTTACGCCGTTGGTACAGACTCG 851
Query 833 AGGATTGGTCCCAAGTTCTTGAACTCGAGTGTTGGATTCGGTGGTTCGTGTTTCCAGAAG 892
|| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 852 AGAATTGGTCCTAAGTTCTTGAACTCGAGTGTCGGATTCGGAGGTTCGTGTTTCCAGAAG 911
Query 893 GACATTCTGAATCTTGTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGAGTAC 952
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GATATTCTGAATCTTGTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGAGTAC 971
Query 953 TGGAAGCAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTTGTT 1012
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TGGAAACAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTTGTT 1031
Query 1013 TCCTCCATGTTCAACTCTGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATTCAAG 1072
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TCTTCCATGTTCAACTCCGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATTCAAG 1091
Query 1073 AAAGACACCGGTGACACAAGGGAGACTCCAGCCATCGATGTGTGCAAGGGTCTTTTAGAA 1132
||||| || |||||||||||||| |||||||||||||| ||||||||||||||| | |||
Sbjct 1092 AAAGATACAGGTGACACAAGGGAAACTCCAGCCATCGACGTGTGCAAGGGTCTTCTCGAA 1151
Query 1133 GACAAAGCAAGGCTAAGCATTTACGACCCACAAGTGACTGAGGATCAGATCCAGAGGGAT 1192
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1152 GACAAAGCAAGGCTAAGTATTTACGACCCGCAGGTGACTGAGGATCAGATCCAGAGGGAT 1211
Query 1193 TTATCCATGAACAAGTTCGACTGGGACCATCCTCTACATTTGCAGCCAATGAGCCCAACA 1252
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1212 TTATCCATGAACAAGTTCGACTGGGACCATCCGCTACATTTGCAGCCAATGAGCCCAACC 1271
Query 1253 ACAGTGAAACAAGTGACCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCTCACGGT 1312
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1272 ACAGTGAAACAAGTGAGCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCGCACGGT 1331
Query 1313 ATCTGCATCATGACCGAGTGGGATGAGTTCAAGAACCTTG-ATTTCCAGAAGATCTTTGA 1371
|||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 1332 ATCTGCATCATGACTGAGTGGGATGAGTTCAAGAAC-TTGGACTTCCAGAAGATCTTTGA 1390
Query 1372 CAACATGCAGAAACCAGCTTTCGTGTTCGATGGAAGAAACATTATGAATCTGCAAAAGCT 1431
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1391 CAACATGCAGAAACCGGCTTTCGTGTTCGACGGAAGAAACATTATGAATCTGCAAAAGCT 1450
Query 1432 AAGGGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCTCTCGACGACTGGCTCAAGGA 1491
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1451 AAGGGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCCCTTGACGACTGGCTCAAGGA 1510
Query 1492 CATGCCTGCCGTTGCCTAATGATGTTCATTGCTGACTCTTTCGTCCTCCATCATTTGTGC 1551
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1511 CATGCCTGCCGTTGCCTAATGATGTCCATTGCTGATTCTTTCGTCCTCCATCATTTGTGC 1570
Query 1552 TTTTCTTCTTCTTGTGGTTTGTCTTT-AAGACTTGTTATATTTCTTACAATATGTTTGTT 1610
|| ||| || |||| || |||||| || ||||||||||||||||||||| ||||||||
Sbjct 1571 TT--CTT-TTGTTGT--TT-GTCTTTGAA-ACTTGTTATATTTCTTACAATGTGTTTGTT 1623
Query 1611 ATGT-TCTCTGGTGTGTGTTTTGttttttttGGTATT-A-CTTTCATAttttttt-GGTC 1666
|| | |||||||||||| |||| |||||||| | || | ||||||||||||||| ||||
Sbjct 1624 ATATGTCTCTGGTGTGTTTTTTTTTTTTTTTT-T-TTCAACTTTCATATTTTTTTTGGTC 1681
Query 1667 GAAGAGGACTTGTATTCGACAATGTCGCTTCAATTTTGTTGTTTCCTTAGA 1717
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 GAAGAGGACTTGTATTCGACAATGTCGCTTCAATTTTGTTGTTTCCTTAGA 1732
> Ahg947904 jgi|Araly1|947904|scaffold_704133.1
Length=1487
Score = 1434 bits (776), Expect = 0.0
Identities = 1240/1464 (85%), Gaps = 32/1464 (2%)
Strand=Plus/Plus
Query 64 AAAGATGGTGAAGATATGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGT 123
||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 20 AAATATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGTGGACCAACAATGGCAGT 79
Query 124 GATTGCATTGAAATGTCCAGACGTTGAAGTAGCGGTTGTTGATATCTCTGTACC-ACGTA 182
||||||||||||||||||||| |||||||||| ||||||||||||||||| || | | |
Sbjct 80 GATTGCATTGAAATGTCCAGATATTGAAGTAGCAGTTGTTGATATCTCTGTTCCTAGG-A 138
Query 183 TCAACGCTTGGAACAGTGA-CACGCTTCCGATTTACGAGCCTGGTCTTGATGATGTTGTG 241
|| | |||||||| ||||| || |||||||||||||||||| || ||||| ||| ||||
Sbjct 139 TCGAGGCTTGGAATAGTGATCA-GCTTCCGATTTACGAGCCAGGACTTGACGATATTGTT 197
Query 242 AAGCAATGCCGTGGCAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGAA 301
|||||||| | || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 198 AAGCAATGTAGAGGGAAGAACCTTTTCTTTAGTACTGATGTGGAGAAACATGTTAGAGAA 257
Query 302 GCTGATATTGTGTTTGTTTCTGTCAACACACCGACTAAGACTAGAGGTCTTGGTGCTGGT 361
|||||||| || ||||| ||||| || ||||||||||| || | |||||||| |||||
Sbjct 258 GCTGATATCGTTTTTGTCTCTGTTAATACACCGACTAAAACGACTGGTCTTGGAGCTGGG 317
Query 362 AAAGCTGCGGATCTTACGTACTGGGAGAGCGCTGCGCGTATGATCGCTGATGTTTCGGTA 421
|||||||||||||| || || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct 318 AAAGCTGCGGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGGATGTATCGGTT 377
Query 422 TCGGATAAGATTGTCGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTGAG 481
|| ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 378 TCTGATAAGATTGTTGTTGAGAAATCGACTGTACCGGTCAAGACAGCTGAAGCTATTGAG 437
Query 482 AAGATTTTGACACATAACAGTAAAGGGATTAAGTTTCAGATTCTTTCGAATCCCGAGTTT 541
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 438 AAGATTTTGATGCATAATAGTAAAGGGATCAAGTTTCAGATTCTTTCGAATCCGGAGTTT 497
Query 542 -TTGGCGGAAGGAACCGCGATTAAGGACCTATTTAATCCGGACCGTGTTCTT-ATCGGAG 599
||| | |||||||| ||||| || || ||||| || |||||||| ||| |||||||
Sbjct 498 CTTG-CAGAAGGAACTGCGATCGCTGATCTTTTTAACCCTGACCGTGT-CTTGATCGGAG 555
Query 600 GGCGGGAAACCCCAGAAGGGTTTAAAGCGGTGCAGACTCTCAAGAATGTGTATGC-ACAC 658
|||| ||||| |||||||| || ||||| || ||||| || ||| | || ||||| | |
Sbjct 556 GGCGAGAAACACCAGAAGGATTCAAAGCTGTTCAGACACTTAAGGAGGTTTATGCTA-AT 614
Query 659 TGGGTTCCTGAAGGCCAAATCATAACAACCAATCTCTGGTCTGCTGAGCTGTCCAAGCTT 718
||||||||||||| ||||||||| ||||| |||||||||||||| ||||| || ||| ||
Sbjct 615 TGGGTTCCTGAAGACCAAATCATCACAACAAATCTCTGGTCTGCGGAGCTTTCTAAG-TT 673
Query 719 -GCGGCAAACGCTTTCTTGGCTCAAAGGATTTCATCAGTGAATGCTATGTCGGCTCTGTG 777
|| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||
Sbjct 674 AGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTGCTCTCTG 733
Query 778 TGAAGCCACAGGCGCAGATGTCACGCAAGTGTCTTACGCGGTTGGTACAGACTCAAGGAT 837
|||| |||| || || ||||| || ||||| |||||||| |||||||| || ||||| ||
Sbjct 734 TGAATCCACCGGTGCTGATGTTACTCAAGTTTCTTACGCTGTTGGTACTGATTCAAGAAT 793
Query 838 TGGTCCCAAGTTCTTGAACT-CGAGTGTTGGATTCGGTGGTTCGTGTTTCCAGAAGGACA 896
||| |||| |||||||| | | |||||||||||||| ||||| ||||||||||||||||
Sbjct 794 CGGTTCCAAATTCTTGAA-TGCTAGTGTTGGATTCGGCGGTTCTTGTTTCCAGAAGGACA 852
Query 897 TTCTGAATCTTGTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGAGTACTGGA 956
|||||||||| |||||||||||| | ||||||||||| || |||||||| || |||||||
Sbjct 853 TTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAATACTGGA 912
Query 957 AGCAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTTGTTTCCT 1016
| ||||| ||||||||||| || ||||| |||| | |||| |||||| | | || ||||
Sbjct 913 AACAAGTGATCAAGATCAACGATTACCAAAAGAACAGGTTTGTGAACAGAATCGTCTCCT 972
Query 1017 CCATGTTCAACTCTGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATTCAAGAAAG 1076
| ||||||||| |||| || ||||||||| ||||| | ||||| ||||||||||||||||
Sbjct 973 CTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATCCTCGGATTCGCATTCAAGAAAG 1032
Query 1077 ACACCGGTGACACAAGGGAGACTCCAGCCATCGATGTGTGCAAGGGTCTTTTAGAAGACA 1136
|||| |||||||||||||| || || ||||| |||||||| || ||||| |||| |||||
Sbjct 1033 ACACAGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTGTTAGGAGACA 1092
Query 1137 AAGCAAGGCTAAGCA-T-T-TACGACCCACAAGTGACTGAGGATCAGATCCA-GAGGGAT 1192
|||| | |||| || | | || || || ||||| || ||||| ||||| | ||| |||
Sbjct 1093 AAGC--G-CTAATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATT-ATGAGAGAT 1148
Query 1193 TTATCCATGAACAAGTTCGACTGGGACCATCCTCTACATTTGCAGCCAATGAGCCCAACA 1252
| || ||||| ||||| |||||||||||||| || || |||||||||||||| |||||
Sbjct 1149 CTCTCGATGAAAAAGTTTGACTGGGACCATCCCCTTCACTTGCAGCCAATGAGTCCAACC 1208
Query 1253 ACAGTGAAACAAGTGACCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCTCACG-G 1311
|||||||||||||||| || |||||||||||||| | ||| || || ||||| |||| |
Sbjct 1209 ACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGCAGCTACAAAAGACGCACACGCG 1268
Query 1312 -TATCTGCATCATGACCGAGTGGGATGAGTTCAAGAACCTT-GATTTCCAGAAGATCTTT 1369
| | ||||| |||| |||||||| ||||| ||| | || |||| ||||||||||||
Sbjct 1269 GT-T-TGCATTTTGACTGAGTGGGACGAGTTTAAGT-CGTTAGATTACCAGAAGATCTTC 1325
Query 1370 GACAACATGCAGAAACCAGCTTTCGTGTTCGATGGAAGAAACATTATGAATCTGCAA-AA 1428
||||||||||||||||| ||||| | ||||| |||||||||||||||||| | || ||
Sbjct 1326 GACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTT-AACAA 1384
Query 1429 GCTAAGGGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCTCTCGACG-ACTGGCTCA 1487
| |||| |||||||||||||| |||||||||||||||||||| |||||| | |||||||
Sbjct 1385 GTTAAGAGAGATTGGTTTCATCGTTTACTCCATTGGTAAGCCACTCGACCCA-TGGCTCA 1443
Query 1488 AGGACATGCCTGCCGTTGCCTAAT 1511
|||||||||||||| ||| |||||
Sbjct 1444 AGGACATGCCTGCCTTTGTCTAAT 1467
> Ahg488394 jgi|Araly1|488394|fgenesh2_kg.6__1528__AT5G15490.1
Length=1780
Score = 1181 bits (639), Expect = 0.0
Identities = 1203/1472 (82%), Gaps = 51/1472 (3%)
Strand=Plus/Plus
Query 64 AAAGATGGTGAAGATATGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGT 123
||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 103 AAA-ATGGTGAAGATTTGCTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCGGT 161
Query 124 GATTGCAT-TGAAATGTCCAGAC-GTTGAAGTAGCGGTTGTTGATATCTCTGTACCACGT 181
||||| | | || |||||| | ||||||||||| ||||||||||||||||| ||| |
Sbjct 162 CATTGC-TCTCAAGTGTCCA-TCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGG 219
Query 182 ATCAACGCTTGGAACAGTGA-CACGCTTCCGATTTACGAGCCTGGTCTTGATGATGTTGT 240
||||| || |||||||| || || |||||| || || ||||||||||| |||||||| ||
Sbjct 220 ATCAATGCATGGAACAGCGACCA-GCTTCCAATCTATGAGCCTGGTCTCGATGATGTGGT 278
Query 241 GAAGCAATGCCGTGGCAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGA 300
||||| |||||||| ||||| || ||||| || |||||||||||||| ||||| || ||
Sbjct 279 TAAGCAGTGCCGTGGAAAGAATCTCTTCTTCAGCACTGATGTTGAGAAGCATGTGAGAGA 338
Query 301 AGCTGATATTGTGTTTGTTTCTGTCAACACACCGACTAAGACTAGAGGTCTTGGTGCTGG 360
||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||| |||||
Sbjct 339 GGCTGACATTGTTTTTGTGTCTGTCAACACCCCGACTAAGACCCGTGGTCTTGGAGCTGG 398
Query 361 TAAAGCTGCGGATCTT-ACGTACTGGGAGAGCGCTGCGCGTATGATCGCTGATGTTTCGG 419
|||||||||||| || || ||||||||||||||||| |||||||| || ||||||||||
Sbjct 399 CAAAGCTGCGGAT-TTGACTTACTGGGAGAGCGCTGCTCGTATGATTGCGGATGTTTCGG 457
Query 420 TATCGGATAAGATTGTCGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTG 479
| || || |||||||| ||||||||||| |||||||| || ||||| || || || ||||
Sbjct 458 TTTCTGACAAGATTGTTGTTGAGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTG 517
Query 480 AGAAGATT-TTGACACATAACAGTAAAGGGATTAAGTTTCAGATTCTT-TCGAATCCC-G 536
|||||||| || || || || || ||||| || || || |||||| || || || ||| |
Sbjct 518 AGAAGATTCTT-ACCCACAATAGCAAAGGAATCAAATTCCAGATT-TTGTC-AAACCCTG 574
Query 537 AGTT-TTTGGCGGAAGGAACCGCGATT-AAGGACCTATTTAAT-CCGGACCGTGTTCTTA 593
|||| || || ||||||||||| ||| || ||||| ||| || || |||||||| || |
Sbjct 575 AGTTCCTT-GCTGAAGGAACCGCTATTGAA-GACCT-TTTCATGCCTGACCGTGTCCTCA 631
Query 594 TCGGAGGGCGGGAAACCCCAGAAGGGTTTAAAGCGGTGC--AGACTCT-CAAGAATGTGT 650
|||| || || ||||| || ||||| ||| ||| || | || || | ||| | || |
Sbjct 632 TCGGTGGTCGTGAAACACCTGAAGGCTTTGCAGCCGT-CAAAGCCT-TGAAAG-ACGTTT 688
Query 651 ATGCACACTGGGTTCCTGAAGGCCA-AATCATAACAACCAATCTCTGGTCTGCTGAGCTG 709
|| | || ||||| |||||| | | |||| | || ||||||||||||||||| |||||
Sbjct 689 ATTCCCAATGGGTCCCTGAA-GAGAGAATCCTCACCACCAATCTCTGGTCTGCCGAGCTT 747
Query 710 TCCAAGCTTGCGGCAAACGCTTTCTTGGCTCAAAGGATTTCATCAGTGAATGCTATGTCG 769
||||||||||| || ||||| ||||| || || || || |||||||| ||||| |||||
Sbjct 748 TCCAAGCTTGCAGCTAACGCCTTCTTAGCCCAGAGAATCTCATCAGTCAATGCAATGTCC 807
Query 770 GCTCTGTGTGAAGCCACAGGCG-CAGATGTCAC-GCAAGTGTCTTACGCGGTTGGTACAG 827
||||| |||||||| || |||| || ||||| | | | || |||||||| || || | ||
Sbjct 808 GCTCTCTGTGAAGCAACTGGCGCCA-ATGTCTCAG-AGGTCTCTTACGCTGTGGGCAAAG 865
Query 828 ACTCAAGGATTGGTCCCAAGTTCTTGAACTCGAGTGTTGGATTCGGTGGTTCGTGTTTCC 887
|||| |||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 866 ACTCCCGGATTGGTCCCAAGTTCTTGAACTCGAGTGTTGGATTCGGAGGATCTTGTTTCC 925
Query 888 AGAAGGACATTCTGAATCTT-GTCTACATCTGTGAGTGCAACGGACT--CCCGGAAGTGG 944
|||| || ||||| || ||| ||||||||||| || |||||||| || |||| |||| |
Sbjct 926 AGAAAGATATTCTCAA-CTTAGTCTACATCTGCGAATGCAACGG-CTTACCCG-AAGTTG 982
Query 945 CAGAGTACTGGAAGCAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACC 1004
| ||||||||||| ||||||||||||||||| ||||||||||| | ||| || || ||||
Sbjct 983 CTGAGTACTGGAAACAAGTCATCAAGATCAACGACTACCAGAAAACCCGATTTGTTAACC 1042
Query 1005 GTGTTGTTTCCTCCATGTTCAACTCTGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCG 1064
| |||| || || ||||||||| | || || ||||| ||||||||||||||||| ||||
Sbjct 1043 GCATTGTCTCTTCAATGTTCAACACAGTCTCCAACAAAAAGATTGCGGTTCTCGGGTTCG 1102
Query 1065 CATTCAAGAAAGACACCGGTGACACAAGGGAGACTCCAGCCATCGATGTGTGCAAGGGTC 1124
| |||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 1103 CTTTCAAGAAAGACACAGGAGACACAAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTC 1162
Query 1125 TTTTAGAAGACAAAGCAAGGCTAAGCATTTACGACCCACAAGTGACTGAGGATCAGATCC 1184
| |||| |||||||| | || ||||| |||||||||||||| ||||| || |||||||
Sbjct 1163 TGTTAGGTGACAAAGCTCGTCTCAGCATCTACGACCCACAAGTCACTGAAGACCAGATCC 1222
Query 1185 AGAGGGATTTATCCATGAACAAGTTCGACTGGGACCATCCTCTACATTTGCAGCCAATGA 1244
| || || ||| |||||||||| |||||||||||||| || || ||| | ||||| ||||
Sbjct 1223 AAAGAGACTTAACCATGAACAAATTCGACTGGGACCACCCGCTTCATCTCCAGCCCATGA 1282
Query 1245 GCCCAACAACAGTGAAACAAGTGACCGTTACTTGGGACGCATACGAA-GCAACTAAGGAC 1303
|||| || || ||||||||||| | || |||||||||||||| | ||||| || |||
Sbjct 1283 GCCCCACCACTGTGAAACAAGTCTCAGTCGCTTGGGACGCATAC-ACTGCAACCAAAGAC 1341
Query 1304 GCTCACGGTATCTGCATCATGACCGAGTGGGATGAGTTCAAGAACCTTGATTTCCAGAAG 1363
|| |||||||||||||| | ||||||||||| ||||||||||| || ||||||||| |
Sbjct 1342 GCCCACGGTATCTGCATTTTAACCGAGTGGGACGAGTTCAAGAAACTCGATTTCCAGCGG 1401
Query 1364 ATCTTTGACAACATGCAGAAACCAGCTTTCGTGTTCGATGGAAGAAACATTAT-GAATCT 1422
|||||||| || ||||||||||| ||||| || || || || ||||| | | || ||
Sbjct 1402 ATCTTTGAGAATATGCAGAAACCGGCTTTTGTTTTTGACGGTAGAAATGTGGTCGACGCT 1461
Query 1423 G-CAAAAGCTAAGGGAGATTGG-TTTCATTGTTTACTCCATTGGTAAGCC-TCTCGACGA 1479
| |||| || ||| | ||||| ||| ||||||||||||||||||||||| | | ||| |
Sbjct 1462 GACAAA--CTCAGGCAAATTGGGTTT-ATTGTTTACTCCATTGGTAAGCCAT-TGGACCA 1517
Query 1480 CTGGCTCAAGGACATGCCTGC-CGTTGCCTAA 1510
|||||||||||||||||||| | ||||||||
Sbjct 1518 GTGGCTCAAGGACATGCCTGCTC-TTGCCTAA 1548
> Ahg927678 jgi|Araly1|927678|scaffold_300135.1
Length=1486
Score = 1147 bits (621), Expect = 0.0
Identities = 1191/1463 (81%), Gaps = 52/1463 (4%)
Strand=Plus/Plus
Query 64 AAAGATGGTGAAGATATGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGT 123
||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 19 AAAAATGGTGAAGATCTGCTGCATTGGAGCTGGTTATGTTGGTGGTCCAACTATGGCTGT 78
Query 124 GATTGCATTGAAATGTCCAGAC-GTTGAAGTAGCGGTTGTTGATATCTCTGTACCACGTA 182
||||| |||||||||||| | |||||||| || ||||||||||||||||| ||||| |
Sbjct 79 CATTGCTTTGAAATGTCCA-TCTGTTGAAGTTGCTGTTGTTGATATCTCTGTTCCACGGA 137
Query 183 TCAAC-GCTTGGAACAGTGA-CACGCTTCCGATTTACGAGCCTGGTCTTGATGATGTTGT 240
|| || |||||||||||||| || |||||| || || ||||| || || |||||||||||
Sbjct 138 TC-ACTGCTTGGAACAGTGACCA-GCTTCCTATCTATGAGCCGGGCCTCGATGATGTTGT 195
Query 241 GAAGCAATGCCGTGGCAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGA 300
||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 196 TAAGCAATGCCGTGGCAAGAACCTCTTCTTTAGTACTGATGTGGAGAAACACGTGAGAGA 255
Query 301 AGCTGATATTGTGTTTGTTTCTGTCAACACACCGACTAAGACTAGAGGTCTTGGTGCTGG 360
||||||||| || ||||| ||||| || || |||||||||||| | |||||||| |||||
Sbjct 256 AGCTGATATCGTCTTTGTCTCTGTGAATACCCCGACTAAGACTCGTGGTCTTGGAGCTGG 315
Query 361 TAAAGCTGCGGATCTT-ACGTACTGGGAGAGCGCTGCGCGTATGATCGCTGATGTTTCGG 419
||||||||| ||| || || |||||||| ||||| || || ||||| |||||||||||||
Sbjct 316 TAAAGCTGCTGAT-TTGACTTACTGGGAAAGCGCAGCTCGGATGATTGCTGATGTTTCGG 374
Query 420 TATCGGATAAGATTGTCGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTG 479
| || || ||||| || || |||||||| ||||| || || ||||| |||||||||||||
Sbjct 375 TTTCTGACAAGATCGTTGTCGAGAAATCAACTGTCCCTGTCAAAACCGCTGAAGCTATTG 434
Query 480 AGAAGATTTTGACACATAACAGTAAAGGGATTAAGTTTCAGATTCTTTCGAATCCC-GAG 538
|||||||| ||| || ||||||||||| || ||||| ||||||||||| || ||| |||
Sbjct 435 AGAAGATTCTGATGCACAACAGTAAAGGAATCAAGTTCCAGATTCTTTCCAA-CCCTGAG 493
Query 539 TT-TTTGGCGGAAGGAACCGCGATT-AAGGACCTATTT-AATCCGGACCGTGTTCTTATC 595
|| || || ||||||||||| ||| || || || ||| |||| ||||||||||| |||
Sbjct 494 TTCCTT-GCTGAAGGAACCGCTATTGAA-GATCT-TTTCTATCCTGACCGTGTTCTCATC 550
Query 596 GGAGGGCGGGAAAC-CCCAGAAGGGTTTAAAGCGGTGCAGA-CTCTCAAGA-ATGTGTAT 652
|| || || ||||| ||| |||||||||||||| || || | | || || | | || |||
Sbjct 551 GGTGGTCGTGAAACACCC-GAAGGGTTTAAAGCTGT-CAAAGC-CTTAAAAGACGTTTAT 607
Query 653 GCACACTGGGTTCCTGAAGGCCA-AATCATAACAACCAATCTCTGGTCTGCTGAGCTGTC 711
|| || |||||||| ||| | | |||| |||| || ||||||||||| |||||||| |
Sbjct 608 GCTCAGTGGGTTCCAGAA-GATAGAATCCTAACCACTAATCTCTGGTCCGCTGAGCTCAC 666
Query 712 CAAGCTTGCGGCAAACGCTTTCTTGGCTCAAAGGATTTCATCAGTGAATGCTATGTCGGC 771
||||||||| || ||||| ||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 667 CAAGCTTGCTGCCAACGCATTCTTAGCCCAAAGAATCTCATCTGTCAATGCAATGTCTGC 726
Query 772 TCTGTGTGAAGCCACAGGCGCAG-ATGTCAC-GCAAGTGTCTTACGCGGTTGGTACAGAC 829
||| ||||||||||| || || | ||||| | | |||| || || || ||||||| ||||
Sbjct 727 TCTCTGTGAAGCCACTGGTGC-GAATGTCTCTG-AAGTCTCCTATGCTGTTGGTAAAGAC 784
Query 830 TCAAGGATTGGTCCCAAGTTCTTGAACTCGAGTGTTGGATTCGGTGGTTCGTGTTTCCAG 889
|| || || ||||||||||||||||| |||||||| || || ||||| || |||||||||
Sbjct 785 TCTAGAATCGGTCCCAAGTTCTTGAATTCGAGTGTCGGCTTTGGTGGCTCCTGTTTCCAG 844
Query 890 AAGGACATTCTGAATCTT-GTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGA 948
|| || || || || ||| |||||||||||||| |||||||| ||||| ||||| || ||
Sbjct 845 AAAGATATCCTCAA-CTTAGTCTACATCTGTGAATGCAACGGCCTCCCTGAAGTAGCGGA 903
Query 949 GTACTGGAAGCAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGT 1008
|||||||| ||||||||||||||||||||||||||||| | |||||| || ||||| |
Sbjct 904 ATACTGGAAACAAGTCATCAAGATCAATGACTACCAGAAAACCCGGTTTGTAAACCGCAT 963
Query 1009 TGTTTCCTCCATGTTCAACTCTGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATT 1068
||| ||||| ||||||||| | || || ||||| |||||||| || ||||| ||||| ||
Sbjct 964 TGTGTCCTCGATGTTCAACACCGTTTCCAACAAAAAGATTGCCGTCCTCGGGTTCGCCTT 1023
Query 1069 CAAGAAAGACACCGGTGACACAAGGGAGACTCCAGCCATCGATGTGTGCAAGGGTCTT-T 1127
||||||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||| || |
Sbjct 1024 CAAGAAAGATACCGGAGACACGAGAGAGACTCCAGCCATTGATGTCTGCAAAGGT-TTGT 1082
Query 1128 TAGAAGACAAAGCAAGGCTAAGCATTTACGACCCACAAGTGACTGAGGATCAGATCCAGA 1187
||| ||||||||| | | ||||| || || |||||||| ||||| || |||||||| |
Sbjct 1083 TAGGAGACAAAGCCCGAATCAGCATCTATGATCCACAAGTCACTGAAGAACAGATCCAAA 1142
Query 1188 GGGATTTATCCATGAACAAGTTCGACTGGGACCATCCTCTACAT-TTGCAGCCAATGAGC 1246
| || ||| |||||||||| ||||||||||||||||| | || || || || |||||
Sbjct 1143 GAGACTTAACCATGAACAAATTCGACTGGGACCATCCAATTCACCTT-CAACCCATGAGT 1201
Query 1247 CCAACAACAGTGAAACAAGTGACCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCT 1306
||||| || ||||||||||| | || ||||||||| || | || ||||| || ||
Sbjct 1202 CCAACCACTGTGAAACAAGTCTCAGTCGTTTGGGACGCCTATGCTGCCACTAAAGATGCC 1261
Query 1307 CACGGTATCTGCATCATGACCGAGTGGGATGAGTTCAAGAAC-CTTGATT-TCCAGAAG- 1363
|| || |||||| | | || |||||||| ||||| ||| | ||||| | | || |
Sbjct 1262 CATGGAATCTGCTTGTTAACGGAGTGGGACGAGTTTAAGT-CGCTTGACTATG-AGC-GT 1318
Query 1364 ATCTTTGACAACATGCAGAAACCAGC-TTTCGTGTTCGATGGAAGAAACATTAT-GAATC 1421
|||||||| || |||||||||||||| ||| || |||||||| ||||| || | || |
Sbjct 1319 ATCTTTGAAAATATGCAGAAACCAGCGTTT-GTCTTCGATGGCAGAAATGTTGTTGA-T- 1375
Query 1422 TGCA-A-AAGCTAAGGGAGATTGG-TTTCATTGTTTACTCCATTGGTAAGCC-TCTCGAC 1477
||| | ||||| ||| |||| || ||| ||||||||||| ||||||||||| | | |||
Sbjct 1376 -GCAGAGAAGCTGAGGAAGATAGGGTTT-ATTGTTTACTCTATTGGTAAGCCAT-TGGAC 1432
Query 1478 GACTGGCTCAAGGACATGCCTGC 1500
| ||||||||||||||||||||
Sbjct 1433 CAGTGGCTCAAGGACATGCCTGC 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5