BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29365.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896903 jgi|Araly1|896903|Al_scaffold_0005_869 870 0.0
> Ahg896903 jgi|Araly1|896903|Al_scaffold_0005_869
Length=774
Score = 870 bits (471), Expect = 0.0
Identities = 574/624 (92%), Gaps = 6/624 (1%)
Strand=Plus/Plus
Query 216 AAGGAGCATGTGGTTACGGAGATCTATTCAAACAAGGTTACGGCTTAGAGACAGCTGCAC 275
||||||||||||||||||| |||||||||||| ||||||||||||||||||| || || |
Sbjct 155 AAGGAGCATGTGGTTACGGGGATCTATTCAAAGAAGGTTACGGCTTAGAGACGGCGGCGC 214
Query 276 TAAGCACTGCTCTTTTCAACAATGGCCAGACTTGTGGTGCTTGTTTCGAGCTCATGTGTG 335
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 215 TAAGCACGGCTCTTTTCAACAATGGCCAAACTTGTGGTGCTTGTTTCGAGCTCATGTGTG 274
Query 336 TTAGCTC-AAAGTGGTGCAAACCAAACGCTGGTTCAATCAAAATCACAGCCACTAATTTT 394
| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TGAACTCTAAA-TGGTGCAAACCAAACGCTGGTTCAATCAAAATCACAGCCACTAATTTC 333
Query 395 TGCCCACCAAATTATCAAGAACCGGTTCAGTACCATTGGTGCAACCCTCCTAACAAGCAC 454
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 334 TGCCCACCAAATTATGACGAACCGGTTCAATACCATTGGTGCAACCCTCCTAACAAGCAC 393
Query 455 TTTGATCTATCAATGAAAATGTTTTCACTACGGTGGCTGAGTACCGAGCAGGGATAGTTC 514
||||||||||| ||||||||||| |||| || ||||||||||| || |||||||||||
Sbjct 394 TTTGATCTATCGATGAAAATGTT--CACTTCGATGGCTGAGTACAAAGGAGGGATAGTTC 451
Query 515 CGGTGAAGTTCCGGCGAGTGGCCTGTCATAAGAGAGGTGGTGTTAGGTTTGAGATTAAGG 574
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 452 CGGTGAAGTTCAGGCGAGTGATGTGTCATAAGAGAGGTGGTGTGAGGTTTGAGATTAAGG 511
Query 575 GCAATCCTTATTATATCATGGTTTTGGTTTATAACGTTGGAGGGGCAGGAGATGTGAGTA 634
|||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 512 GCAATCCTTATTTTATCATGGTTTTGGTGTATAACGTTGGAGGCGCAGGAGATGTGAATA 571
Query 635 ACGTTGAAATTAGAGGGCAAAAGAGTAATTGGATCGTTATGAAGAGAAATTGGGGGCAAA 694
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 572 ACGTTGAAATTAGAGGGCATAAGAGTAATTGGATCGTTATGAAGAGGAATTGGGGGCAAA 631
Query 695 TTTGGGATACCGGTTTAGATTTGGTTGGACAAAGTCTCTCGTTTATAGTTCGGACCAGCG 754
||||| |||| ||| | ||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct 632 TTTGGAATACTGGTGTGGATTTGGTTGGACAAAGGCTCTCGTTTGTGGTTCGGACCAGTG 691
Query 755 ATGGTAGGAGCATGACGTTCTTTAATGTTGCGCCTCCGAATTGGGGTTTCGGTCAAACTT 814
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 692 ATGGTAGGAGCATGACGTTCTTTAATGTTGCGCCTGCGAGTTGGGGGTTCGGTCAAACTT 751
Query 815 ACGAAGCAAAA-TCGAATTTTTAG 837
||||||||| | ||| ||||||
Sbjct 752 TTGAAGCAAAACT-GAACTTTTAG 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5