BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29370.1

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936758 jgi|Araly1|936758|scaffold_500949.1                        363    1e-99


> Ahg936758 jgi|Araly1|936758|scaffold_500949.1
Length=375

 Score =  363 bits (196),  Expect = 1e-99
 Identities = 261/293 (89%), Gaps = 2/293 (1%)
 Strand=Plus/Plus

Query  95   GAAGAAGAAGAGCAAATGTGTCGTC-ACGTACGAGAGTTTTACACACGTGCTGTGGAAAT  153
            |||| ||||||||| |||||||||| || |||| | |||||||  |||||||| ||||||
Sbjct  81   GAAGTAGAAGAGCACATGTGTCGTCAAC-TACGCGGGTTTTACGTACGTGCTGCGGAAAT  139

Query  154  GGTAGTAGCGACGGAGGGAAGACGGTGATGGAGAAGCTTCTTGCGTTAAAGAGCCTTCTT  213
            |||||||| ||||||||||||| ||| | ||||||||| || ||||||||||||||||||
Sbjct  140  GGTAGTAGGGACGGAGGGAAGAAGGTAACGGAGAAGCTCCTAGCGTTAAAGAGCCTTCTT  199

Query  214  CCTCCACCGGTGAATGTCGGTGGTGGAGAGACGGAGGAGCTGTTTCAAGAGACGGCGGAG  273
            ||||| |||| ||||||| | |||||||||||||| ||||||||| ||||||||||||| 
Sbjct  200  CCTCCGCCGGCGAATGTCAGCGGTGGAGAGACGGATGAGCTGTTTAAAGAGACGGCGGAT  259

Query  274  TATATCGTGAAGCTTAGAACACAAGTCGTGGTGTTGAAGAAACTGATTGAGATTTACGAT  333
            ||||| || | ||| |||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  260  TATATAGTCAGGCTAAGAACACAAGTCATGGTGTTGAAGAAACTGATTGAGATTTACGAC  319

Query  334  AACTCTTCTGATCAGAAGAAAGAtgttgttttataatgttcatttatattttc  386
            ||| | ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  320  AACACCTCTGATCAGAAGCTAGATGTTGTTTTATAATGTTCATTTATATTTTC  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18925172144


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5