BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29375.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896906 jgi|Araly1|896906|Al_scaffold_0005_872 896 0.0
Ahg942311 jgi|Araly1|942311|scaffold_602855.1 235 5e-61
Ahg924524 jgi|Araly1|924524|scaffold_200085.1 152 5e-36
Ahg896989 jgi|Araly1|896989|Al_scaffold_0005_955 130 2e-29
> Ahg896906 jgi|Araly1|896906|Al_scaffold_0005_872
Length=786
Score = 896 bits (485), Expect = 0.0
Identities = 608/667 (91%), Gaps = 10/667 (1%)
Strand=Plus/Plus
Query 407 TTATTCTCGTGGAGG-GGAATAATGAGTCACAAGAGCATAAATGGAGATCCATGAAACAG 465
||||| ||||||||| || ||| ||||| |||||||| | |||||||||| ||||||||
Sbjct 125 TTATTGTCGTGGAGGCGG-ATACTGAGTTACAAGAGCCTTCATGGAGATCCCTGAAACAG 183
Query 466 GAAAATGAAGAGCTCaaaaaaaGATTGAGGGTGATGAAAGAGGAGCTAGAGGATAAGGAT 525
|||||||||||||||||||||||||||| || |||| | |||||| ||||||||||||||
Sbjct 184 GAAAATGAAGAGCTCAAAAAAAGATTGAAGGAGATGGAGGAGGAGTTAGAGGATAAGGAT 243
Query 526 TCTGAGTTAGAACAACGAGAAGG-TTTGATTAATGCCCTCTTGGTGAAAGAACGCTAT-G 583
||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
Sbjct 244 TCTGACTTAGAACAACGAG-AGGCTTTGATTAGTGCCCTCTTGGTGAAAGAACGCTATAG 302
Query 584 CCAATGATGAGATACTTGAAGCACAG-AAACTGTTGATCAGTCAAATGAGAGATTTAACG 642
|||||||||||||| ||||||| | ||||| ||||||||| || |||||||||||||
Sbjct 303 -CAATGATGAGATACAAGAAGCAC-GCAAACTATTGATCAGTGAACTGAGAGATTTAACA 360
Query 643 GATGATAGAACGACGATCAGAGTAAAGAGGATGGGACATCTTGATGTAGAGCCCTTCGTA 702
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GATGATAGATCGAAGATCAGAGTAAAGAGGATGGGAGATCTTGATGTAGAGCCCTTCGTA 420
Query 703 AAAGCAAGTAAGCGGAGATTAACTGGC-AACGACACTGAGGTTTACGCGGAATGGGAAGA 761
||||||||||||||||||||||||||| || ||| | || ||||| || ||||||||||
Sbjct 421 AAAGCAAGTAAGCGGAGATTAACTGGCGAA-AACATTAAGCTTTACACGAAATGGGAAGA 479
Query 762 AAACCTCAGGGATCCTCATTGGCAACCATTCAAACGGGTGGAGACTGGAAACATAGTGAA 821
||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 480 AAACCTCAGGGATCCACATTGGCAACCATTCAAATGGGTGGAGACCGGAAACGGAGTGAA 539
Query 822 GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAGAGTGGGGAGAAGA 881
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAAAGTGGGGAGAAGA 599
Query 882 GGTGATGAACGCAGTAAAGACGGCTCTCGAAGAAGTTAACGAGTTTAACCCAAGTGGCCG 941
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GGTGACGAACGCAGTTAAGACGGCTCTCGAAGAAGTTAACGAGTTTAATCCAAGTGGCCG 659
Query 942 ACATGTAGTCCCAACACTGTGGAATTCCGAACAAGGAAGAGTAGCTACATTGAGAGAAGT 1001
|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 660 GCATGTAGTCCCAGCACTGTGGAATTCCGTACAAGGAAGAACAGCTACATTGAGAGAAGC 719
Query 1002 GATTGCTCACATGACACATGAGATCAAAACTCTTAAACGGAAAAAGAATCTGAAACACCG 1061
||||||| ||||||| | ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 720 GATTGCTGACATGACCCGTGAGATCAAAACTCTCAAACGGAAAAAGAATTTGAAACACCG 779
Query 1062 TAAGTAA 1068
|||||||
Sbjct 780 TAAGTAA 786
> Ahg942311 jgi|Araly1|942311|scaffold_602855.1
Length=439
Score = 235 bits (127), Expect = 5e-61
Identities = 244/298 (82%), Gaps = 18/298 (6%)
Strand=Plus/Plus
Query 752 AATGGGAAGAAAAC-CTCAGGGATCC-TCATTGGCAACCATTCAAACGGGT-GGAGACTG 808
||| || ||||||| |||| |||||| ||| ||| | ||||||||||| || ||| || |
Sbjct 116 AAT-GGCAGAAAACACTCAAGGATCCATCA-TGGTATCCATTCAAACGTGTCGGA-ACCG 172
Query 809 GA-AACATAGTGAAGGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAA 867
|| || | | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 173 GAGAA-AAAATGAAGGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTGAGAGAA 231
Query 868 GAGTGGGGAGAAGAGGTGATGAACGCAGTAAAGACGGCTCTCGAAGAAGTTAACGAGTTT 927
|||||||||||||| |||| ||| ||||| ||||| || || | ||| | |||||||||
Sbjct 232 GAGTGGGGAGAAGAAGTGAAGAATGCAGTGAAGACAGCACTTGTGGAACTGAACGAGTTT 291
Query 928 AACCCAAGTGGCCG--ACA-TGTAGTCCCAACACTGTGGAATTCCGAACAAG-GAAGAGT 983
||||| ||||| || ||| ||| ||| ||||||||||| |||||||| || ||
Sbjct 292 AACCCGAGTGGTCGGTACACTGT--TCCGGT-ACTGTGGAATTTCGAACAAGAGAGGAA- 347
Query 984 AGCTACA-TTGAGAGAAGTGATTGCTCACATGACACATGAGATCAAAACTCTTAAACG 1040
||| ||| || | ||||| |||||||||||||| | | ||||||||||||| |||||
Sbjct 348 AGCAACACTTAA-AGAAGGGATTGCTCACATGATAAAGGAGATCAAAACTCGCAAACG 404
> Ahg924524 jgi|Araly1|924524|scaffold_200085.1
Length=277
Score = 152 bits (82), Expect = 5e-36
Identities = 182/228 (80%), Gaps = 16/228 (7%)
Strand=Plus/Plus
Query 821 AGGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAGAGTGGGGAGAAG 880
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 27 AGGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTGAGAGAGGAATGGGGAGAAG 86
Query 881 AGGTG-ATGAACGCAGTAAAGACGGCTCTCGAAGAAGTT-AACGAGTTTAACCCAAGTGG 938
| ||| | ||||||| | | ||| || ||||| || | | || || || |||||||||||
Sbjct 87 AAGTGCA-GAACGCAATTAGGACAGCCCTCGAGGA-GCTGAATGACTTCAACCCAAGTGG 144
Query 939 CCGA--CATGTAGTCCCAACACTGTGGAATTCCG-AACAAGGAAGAGTA-GCTACATTGA 994
|||| |||| || || | ||||||||| | || |||| || | | || ||| |||
Sbjct 145 CCGATACATG--GTTCCGGTAGTGTGGAATTTTGGAA-AAGGGAG-GAAAGCAACACTGA 200
Query 995 GAGAAG-TGATTGCTCACATGAC-ACATGAGATCAAAACTCTTAAACG 1040
||||| | ||| |||||||||| | | ||| |||||||||| |||||
Sbjct 201 AAGAAGGT-ATTACTCACATGACGA-AGGAGGTCAAAACTCTCAAACG 246
> Ahg896989 jgi|Araly1|896989|Al_scaffold_0005_955
Length=309
Score = 130 bits (70), Expect = 2e-29
Identities = 106/123 (86%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 822 GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAGAGTGGGGAGAAGA 881
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 168 GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTGAGAGAGGAATGGGGAGAAGA 227
Query 882 GGTG-ATGAACGCAGTAAAGACGGCTCTCGAAGAAGTT-AACGAGTTTAACCCAAGTGGC 939
||| | ||||||| | | ||| || ||||| || | | || ||||| ||||||||||||
Sbjct 228 AGTGGA-GAACGCAATTAGGACAGCCCTCGAGGA-GCTGAATGAGTTCAACCCAAGTGGC 285
Query 940 CGA 942
|||
Sbjct 286 CGA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5