BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29380.1 Length=1011 Score E Sequences producing significant alignments: (Bits) Value Ahg323014 jgi|Araly1|323014|fgenesh1_pm.C_scaffold_5000558 1375 0.0 Ahg323016 jgi|Araly1|323016|fgenesh1_pm.C_scaffold_5000560 1363 0.0 > Ahg323014 jgi|Araly1|323014|fgenesh1_pm.C_scaffold_5000558 Length=1011 Score = 1375 bits (744), Expect = 0.0 Identities = 926/1015 (91%), Gaps = 8/1015 (1%) Strand=Plus/Plus Query 1 ATGGAAGAAGAGACCTGCTTGGACTGCAAGAGACCAACCATAATGGTGGTTGATCACAGT 60 ||||| |||||||| |||||||||||||||||||| ||||||| |||| ||||||| ||| Sbjct 1 ATGGAGGAAGAGACTTGCTTGGACTGCAAGAGACCGACCATAACGGTGATTGATCATAGT 60 Query 61 AGCGGTGACACCATCTGTTCGGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120 ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCGGCGACACCATCTGCTCAGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120 Query 121 TCTCAGGAATGGAGAACTTTCGCATCCGACGACAATCACAGTGACAGAGACCCAAACCGT 180 ||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| Sbjct 121 TCTGAGGAATGGAGAACTTTCGCCTCCGACGACAATCGCAGTGACCGAGACCCAAACCGT 180 Query 181 GTTGGTGCTGCGACAAACCCTTTTCTCAAATCAGGCGATCTTGTCACCATCATCGAGAAA 240 ||||||||| | || |||||| |||||||||| ||| |||| || ||| ||||||||||| Sbjct 181 GTTGGTGCTCCAACGAACCCTCTTCTCAAATCCGGCAATCTCGTTACCGTCATCGAGAAA 240 Query 241 CCTAAAGAAACCGCTTCCTCTGTTCTGTCCAAAGATGACATCTCCACTTTGTTCCGTGCA 300 |||||||||| || |||||||||| ||||||||||||||||||||||||||| |||| || Sbjct 241 CCTAAAGAAAACGTTTCCTCTGTTGTGTCCAAAGATGACATCTCCACTTTGTGCCGTACA 300 Query 301 CATAATCAAGTCAAGAACCATGAAGAAGACCTAATCAAGCAAGCCTTCGAAGAAATACAG 360 || |||||||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||| Sbjct 301 CAGAATCAAGTCAAGAATCATGAAGAAGATCTAATCAAGAAAGCTTTCGAGGAAATACAG 360 Query 361 AGAATGACCGATGCACTAGACCTAGATATCG-TAATCAACTCTAGGGCTTGTGAGATTGT 419 |||||||| ||||||||| ||||| |||||| | | ||||||||||||||||||||||| Sbjct 361 AGAATGACTGATGCACTATACCTAAATATCGCT-GTAAACTCTAGGGCTTGTGAGATTGT 419 Query 420 CTCCAAATAT-GATGGTCACGCTAACACCAAATTACGTAGAGGGAAGAAGCTAAACGCTA 478 |||||||| | | ||||||||||||||| |||||||| ||||||||||||||| ||||| Sbjct 420 CTCCAAAT-TCGGTGGTCACGCTAACACGAAATTACGCAGAGGGAAGAAGCTATACGCTG 478 Query 479 TATGTGCAGCCTCTGTTTCAACGGCTTGTCGTGAACTGCAACTCTCGAGGACATTGAAAG 538 | ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| Sbjct 479 TTTGTGCAGCCTCTGTTTCAATGGCTTGTCGTGAACTGAAACTGTCGAGGACATTGAAAG 538 Query 539 AGATCGCTGA-GGTTGCCAATGGTGTGGACA-AGAAGGATATCCGGAAAGAGAGTCTGGT 596 |||||||| | ||||||||| ||||| || | |||||||||||| ||| |||| |||| Sbjct 539 AGATCGCT-ATGGTTGCCAACGGTGTTGA-ATTGAAGGATATCCGCAAATCGAGTATGGT 596 Query 597 GATAAAGCGTGTTCTTGAGTCACATCAAACCTCCGTGTCTGCTTCTCAAGCGATTATCAA 656 |||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||| Sbjct 597 GATAAAGCGTGTTCTTGAATCAGATCAAGCCTCCGTGTCTGCTGCTCAAGCGATTATCAA 656 Query 657 CACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAAT 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAAT 716 Query 717 GGCGATTCCAGAAGCGGTTGAGAAAGCAGAGAATTTCGATATCCGGAGAAACCCTAAGTC 776 |||||||| |||||| || || ||||| ||||||||||||||||| |||||||||||||| Sbjct 717 GGCGATTCGAGAAGCTGTCGAAAAAGCTGAGAATTTCGATATCCGAAGAAACCCTAAGTC 776 Query 777 AGTTCTTGCAGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAAACCTAT 836 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 777 AGTTCTTGCGGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAGACCTAT 836 Query 837 TAGAGAAATTGGCATCGTTGCGGAAGTTGTGGAGAATACGATCAAGAACTCGGTTAAAGA 896 | |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 837 TCGAGAAATTGGGATCGTTGCGGAAGTAGTGGAGAATACAATCAAGAACTCGGTTAAAGA 896 Query 897 TATGTACCCGTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATCAT 956 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 897 TATGTACCCTTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAAGCAGAGATTAT 956 Query 957 CAAAAGGTTAGATGGTGTCATCACGTCCTGGGATTCTGCAAAATTTTCAGTATAA 1011 ||| ||||||||||||||||| || || |||||||| |||||| |||||||||| Sbjct 957 CAAGAGGTTAGATGGTGTCATAACTTCTTGGGATTCAGCAAAAAATTCAGTATAA 1011 > Ahg323016 jgi|Araly1|323016|fgenesh1_pm.C_scaffold_5000560 Length=1011 Score = 1363 bits (738), Expect = 0.0 Identities = 925/1016 (91%), Gaps = 10/1016 (1%) Strand=Plus/Plus Query 1 ATGGAAGAAGAGACCTGCTTGGACTGCAAGAGACCAACCATAATGGTGGTTGATCACAGT 60 ||||| |||||||| |||||||||||||||||||| ||||||| |||| ||||||||||| Sbjct 1 ATGGAGGAAGAGACTTGCTTGGACTGCAAGAGACCGACCATAACGGTGATTGATCACAGT 60 Query 61 AGCGGTGACACCATCTGTTCGGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120 ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCGGCGACACCATCTGCTCAGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120 Query 121 TCTCAGGAATGGAGAACTTTCGCATCCGACGACAATCACAGTGACAGAGACCCAAACCGT 180 ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 121 TCTGAGGAATGGAGAACTTTCGCCTCCGACGACAATCGCAGTGACAGAGACCCAAACCGT 180 Query 181 GTTGGTGCTGCGACAAACCCTTTTCTCAAATCAGGCGATCTTGTCACCATCATCGAGAAA 240 ||||||||| | || |||||| |||||||||| || ||||| |||||| ||||||||||| Sbjct 181 GTTGGTGCTCCAACGAACCCTCTTCTCAAATCCGGTGATCTCGTCACCGTCATCGAGAAA 240 Query 241 CCTAAAGAAACCGCTTCCTCTGTTCTGTCCAAAGATGA-CATCTCCACTTTGTTCCGTGC 299 ||||| |||| | ||| |||||| ||||||||||||| | |||| ||||||| |||||| Sbjct 241 CCTAAGGAAAACATTTCTTCTGTTGTGTCCAAAGATGATC-TCTCTACTTTGTGCCGTGC 299 Query 300 ACATAATCAAGTCAAGAACCATGAAGAAGACCTAATCAAGCAAGCCTTCGAAGAAATACA 359 || |||||| ||||||||||||||||||| ||||||||| |||| ||||| |||||||| Sbjct 300 GCAGAATCAACTCAAGAACCATGAAGAAGATCTAATCAAGAAAGCATTCGAGGAAATACA 359 Query 360 GAGAATGACCGATGCACTAGACCTAGATATCGTAATCA-ACTCTAGGGCTTGTGAGATTG 418 |||||| || ||||||||| ||||||||||||| | | ||||||||||||||||||||| Sbjct 360 GAGAATAACTGATGCACTATACCTAGATATCGTTGT-ACACTCTAGGGCTTGTGAGATTG 418 Query 419 TCTCCAAATAT-GATGGTCACGCTAACACCAAATTACGTAGAGGGAAGAAGCTAAACGCT 477 ||||||||| | | ||||||||||||||| |||||||| |||||||||| |||| ||||| Sbjct 419 TCTCCAAAT-TCGGTGGTCACGCTAACACGAAATTACGCAGAGGGAAGACGCTATACGCT 477 Query 478 ATATGTGCAGCCTCTGTTTCAACGGCTTGTCGTGAACTGCAACTCTCGAGGACATTGAAA 537 | ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| Sbjct 478 GTTTGTGCAGCCTCTGTTTCAATGGCTTGTCGTGAACTGAAACTGTCGAGGACATTGAAA 537 Query 538 GAGATCGCTGA-GGTTGCCAATGGTGTGGACA-AGAAGGATATCCGGAAAGAGAGTCTGG 595 ||||||||| | ||||||||| ||||| || | |||||||||||| ||| |||| ||| Sbjct 538 GAGATCGCT-ATGGTTGCCAACGGTGTTGA-ATTGAAGGATATCCGCAAATCGAGTATGG 595 Query 596 TGATAAAGCGTGTTCTTGAGTCACATCAAACCTCCGTGTCTGCTTCTCAAGCGATTATCA 655 ||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| Sbjct 596 TGATAAAGCGTGTTCTTGAATCAGATCAAGCCTCCGTGTCTGCTGCTCAAGCGATTATCA 655 Query 656 ACACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAA 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 ACACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAA 715 Query 716 TGGCGATTCCAGAAGCGGTTGAGAAAGCAGAGAATTTCGATATCCGGAGAAACCCTAAGT 775 ||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||||| Sbjct 716 TGGCGATTCGAGAAGCTGTCGAAAAAGCTGAGAATTTCGATATCCGAAGAAACCCTAAGT 775 Query 776 CAGTTCTTGCAGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAAACCTA 835 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 776 CAGTTCTTGCGGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAGACCTA 835 Query 836 TTAGAGAAATTGGCATCGTTGCGGAAGTTGTGGAGAATACGATCAAGAACTCGGTTAAAG 895 || |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 836 TTCGAGAAATTGGAATCGTTGCGGAAGTCGTGGAGAATACAATCAAGAACTCGGTTAAAG 895 Query 896 ATATGTACCCGTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATCA 955 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 896 ATATGTACCCTTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATTA 955 Query 956 TCAAAAGGTTAGATGGTGTCATCACGTCCTGGGATTCTGCAAAATTTTCAGTATAA 1011 |||| || |||||||||||||| || || ||||||||||||||| || |||||||| Sbjct 956 TCAAGAGATTAGATGGTGTCATAACTTCTTGGGATTCTGCAAAAATTACAGTATAA 1011 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37589196162 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5