BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29380.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323014 jgi|Araly1|323014|fgenesh1_pm.C_scaffold_5000558 1375 0.0
Ahg323016 jgi|Araly1|323016|fgenesh1_pm.C_scaffold_5000560 1363 0.0
> Ahg323014 jgi|Araly1|323014|fgenesh1_pm.C_scaffold_5000558
Length=1011
Score = 1375 bits (744), Expect = 0.0
Identities = 926/1015 (91%), Gaps = 8/1015 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGAGACCTGCTTGGACTGCAAGAGACCAACCATAATGGTGGTTGATCACAGT 60
||||| |||||||| |||||||||||||||||||| ||||||| |||| ||||||| |||
Sbjct 1 ATGGAGGAAGAGACTTGCTTGGACTGCAAGAGACCGACCATAACGGTGATTGATCATAGT 60
Query 61 AGCGGTGACACCATCTGTTCGGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCGGCGACACCATCTGCTCAGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
Query 121 TCTCAGGAATGGAGAACTTTCGCATCCGACGACAATCACAGTGACAGAGACCCAAACCGT 180
||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 121 TCTGAGGAATGGAGAACTTTCGCCTCCGACGACAATCGCAGTGACCGAGACCCAAACCGT 180
Query 181 GTTGGTGCTGCGACAAACCCTTTTCTCAAATCAGGCGATCTTGTCACCATCATCGAGAAA 240
||||||||| | || |||||| |||||||||| ||| |||| || ||| |||||||||||
Sbjct 181 GTTGGTGCTCCAACGAACCCTCTTCTCAAATCCGGCAATCTCGTTACCGTCATCGAGAAA 240
Query 241 CCTAAAGAAACCGCTTCCTCTGTTCTGTCCAAAGATGACATCTCCACTTTGTTCCGTGCA 300
|||||||||| || |||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 241 CCTAAAGAAAACGTTTCCTCTGTTGTGTCCAAAGATGACATCTCCACTTTGTGCCGTACA 300
Query 301 CATAATCAAGTCAAGAACCATGAAGAAGACCTAATCAAGCAAGCCTTCGAAGAAATACAG 360
|| |||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||
Sbjct 301 CAGAATCAAGTCAAGAATCATGAAGAAGATCTAATCAAGAAAGCTTTCGAGGAAATACAG 360
Query 361 AGAATGACCGATGCACTAGACCTAGATATCG-TAATCAACTCTAGGGCTTGTGAGATTGT 419
|||||||| ||||||||| ||||| |||||| | | |||||||||||||||||||||||
Sbjct 361 AGAATGACTGATGCACTATACCTAAATATCGCT-GTAAACTCTAGGGCTTGTGAGATTGT 419
Query 420 CTCCAAATAT-GATGGTCACGCTAACACCAAATTACGTAGAGGGAAGAAGCTAAACGCTA 478
|||||||| | | ||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 420 CTCCAAAT-TCGGTGGTCACGCTAACACGAAATTACGCAGAGGGAAGAAGCTATACGCTG 478
Query 479 TATGTGCAGCCTCTGTTTCAACGGCTTGTCGTGAACTGCAACTCTCGAGGACATTGAAAG 538
| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 479 TTTGTGCAGCCTCTGTTTCAATGGCTTGTCGTGAACTGAAACTGTCGAGGACATTGAAAG 538
Query 539 AGATCGCTGA-GGTTGCCAATGGTGTGGACA-AGAAGGATATCCGGAAAGAGAGTCTGGT 596
|||||||| | ||||||||| ||||| || | |||||||||||| ||| |||| ||||
Sbjct 539 AGATCGCT-ATGGTTGCCAACGGTGTTGA-ATTGAAGGATATCCGCAAATCGAGTATGGT 596
Query 597 GATAAAGCGTGTTCTTGAGTCACATCAAACCTCCGTGTCTGCTTCTCAAGCGATTATCAA 656
|||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 597 GATAAAGCGTGTTCTTGAATCAGATCAAGCCTCCGTGTCTGCTGCTCAAGCGATTATCAA 656
Query 657 CACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAAT 716
Query 717 GGCGATTCCAGAAGCGGTTGAGAAAGCAGAGAATTTCGATATCCGGAGAAACCCTAAGTC 776
|||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 717 GGCGATTCGAGAAGCTGTCGAAAAAGCTGAGAATTTCGATATCCGAAGAAACCCTAAGTC 776
Query 777 AGTTCTTGCAGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAAACCTAT 836
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 AGTTCTTGCGGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAGACCTAT 836
Query 837 TAGAGAAATTGGCATCGTTGCGGAAGTTGTGGAGAATACGATCAAGAACTCGGTTAAAGA 896
| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 837 TCGAGAAATTGGGATCGTTGCGGAAGTAGTGGAGAATACAATCAAGAACTCGGTTAAAGA 896
Query 897 TATGTACCCGTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATCAT 956
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 897 TATGTACCCTTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAAGCAGAGATTAT 956
Query 957 CAAAAGGTTAGATGGTGTCATCACGTCCTGGGATTCTGCAAAATTTTCAGTATAA 1011
||| ||||||||||||||||| || || |||||||| |||||| ||||||||||
Sbjct 957 CAAGAGGTTAGATGGTGTCATAACTTCTTGGGATTCAGCAAAAAATTCAGTATAA 1011
> Ahg323016 jgi|Araly1|323016|fgenesh1_pm.C_scaffold_5000560
Length=1011
Score = 1363 bits (738), Expect = 0.0
Identities = 925/1016 (91%), Gaps = 10/1016 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGAGACCTGCTTGGACTGCAAGAGACCAACCATAATGGTGGTTGATCACAGT 60
||||| |||||||| |||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 1 ATGGAGGAAGAGACTTGCTTGGACTGCAAGAGACCGACCATAACGGTGATTGATCACAGT 60
Query 61 AGCGGTGACACCATCTGTTCGGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCGGCGACACCATCTGCTCAGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
Query 121 TCTCAGGAATGGAGAACTTTCGCATCCGACGACAATCACAGTGACAGAGACCCAAACCGT 180
||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCTGAGGAATGGAGAACTTTCGCCTCCGACGACAATCGCAGTGACAGAGACCCAAACCGT 180
Query 181 GTTGGTGCTGCGACAAACCCTTTTCTCAAATCAGGCGATCTTGTCACCATCATCGAGAAA 240
||||||||| | || |||||| |||||||||| || ||||| |||||| |||||||||||
Sbjct 181 GTTGGTGCTCCAACGAACCCTCTTCTCAAATCCGGTGATCTCGTCACCGTCATCGAGAAA 240
Query 241 CCTAAAGAAACCGCTTCCTCTGTTCTGTCCAAAGATGA-CATCTCCACTTTGTTCCGTGC 299
||||| |||| | ||| |||||| ||||||||||||| | |||| ||||||| ||||||
Sbjct 241 CCTAAGGAAAACATTTCTTCTGTTGTGTCCAAAGATGATC-TCTCTACTTTGTGCCGTGC 299
Query 300 ACATAATCAAGTCAAGAACCATGAAGAAGACCTAATCAAGCAAGCCTTCGAAGAAATACA 359
|| |||||| ||||||||||||||||||| ||||||||| |||| ||||| ||||||||
Sbjct 300 GCAGAATCAACTCAAGAACCATGAAGAAGATCTAATCAAGAAAGCATTCGAGGAAATACA 359
Query 360 GAGAATGACCGATGCACTAGACCTAGATATCGTAATCA-ACTCTAGGGCTTGTGAGATTG 418
|||||| || ||||||||| ||||||||||||| | | |||||||||||||||||||||
Sbjct 360 GAGAATAACTGATGCACTATACCTAGATATCGTTGT-ACACTCTAGGGCTTGTGAGATTG 418
Query 419 TCTCCAAATAT-GATGGTCACGCTAACACCAAATTACGTAGAGGGAAGAAGCTAAACGCT 477
||||||||| | | ||||||||||||||| |||||||| |||||||||| |||| |||||
Sbjct 419 TCTCCAAAT-TCGGTGGTCACGCTAACACGAAATTACGCAGAGGGAAGACGCTATACGCT 477
Query 478 ATATGTGCAGCCTCTGTTTCAACGGCTTGTCGTGAACTGCAACTCTCGAGGACATTGAAA 537
| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 478 GTTTGTGCAGCCTCTGTTTCAATGGCTTGTCGTGAACTGAAACTGTCGAGGACATTGAAA 537
Query 538 GAGATCGCTGA-GGTTGCCAATGGTGTGGACA-AGAAGGATATCCGGAAAGAGAGTCTGG 595
||||||||| | ||||||||| ||||| || | |||||||||||| ||| |||| |||
Sbjct 538 GAGATCGCT-ATGGTTGCCAACGGTGTTGA-ATTGAAGGATATCCGCAAATCGAGTATGG 595
Query 596 TGATAAAGCGTGTTCTTGAGTCACATCAAACCTCCGTGTCTGCTTCTCAAGCGATTATCA 655
||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||
Sbjct 596 TGATAAAGCGTGTTCTTGAATCAGATCAAGCCTCCGTGTCTGCTGCTCAAGCGATTATCA 655
Query 656 ACACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAA 715
Query 716 TGGCGATTCCAGAAGCGGTTGAGAAAGCAGAGAATTTCGATATCCGGAGAAACCCTAAGT 775
||||||||| |||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 716 TGGCGATTCGAGAAGCTGTCGAAAAAGCTGAGAATTTCGATATCCGAAGAAACCCTAAGT 775
Query 776 CAGTTCTTGCAGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAAACCTA 835
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 CAGTTCTTGCGGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAGACCTA 835
Query 836 TTAGAGAAATTGGCATCGTTGCGGAAGTTGTGGAGAATACGATCAAGAACTCGGTTAAAG 895
|| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 836 TTCGAGAAATTGGAATCGTTGCGGAAGTCGTGGAGAATACAATCAAGAACTCGGTTAAAG 895
Query 896 ATATGTACCCGTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATCA 955
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 ATATGTACCCTTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATTA 955
Query 956 TCAAAAGGTTAGATGGTGTCATCACGTCCTGGGATTCTGCAAAATTTTCAGTATAA 1011
|||| || |||||||||||||| || || ||||||||||||||| || ||||||||
Sbjct 956 TCAAGAGATTAGATGGTGTCATAACTTCTTGGGATTCTGCAAAAATTACAGTATAA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5