BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29385.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484707 jgi|Araly1|484707|fgenesh2_kg.5__699__AT3G29385.1 854 0.0
Ahg896917 jgi|Araly1|896917|Al_scaffold_0005_883 601 2e-171
Ahg896908 jgi|Araly1|896908|Al_scaffold_0005_874 586 7e-167
> Ahg484707 jgi|Araly1|484707|fgenesh2_kg.5__699__AT3G29385.1
Length=657
Score = 854 bits (462), Expect = 0.0
Identities = 588/650 (90%), Gaps = 4/650 (1%)
Strand=Plus/Plus
Query 10 TCAACACGGAAGAAGCGT-AAGAGTTCAACCTTTTTACAATCACCATGGCACAAAGTATA 68
|||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 10 TCAAGACCGAAGAAGCGTAAAG-GTTCAACCTTTTTACAATCACCATGGCACAAAGTATA 68
Query 69 TCTACAAGGTTCAGAGTTATGTCACAACATCAGAATTGCTGAACAAGAATGGAACCTTGC 128
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 69 TCTACAAGGTTCAGAGTTATGTCACAGTATCAGAATTGCTGAAGAAGAATGGGGCCTTGC 128
Query 129 GACAAATACACTAAGTGAGAAGGTCGATACAAATGAGGCGATATCTCCATCAAAGAGAAG 188
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 GACAAATACGCTAAGTGAGAAGGTCGATACAAATGAGGCAATATCTCCATCAAAGAGAAG 188
Query 189 GCTTCTTTCATCTACACATCTTATGCAACAGCTTCTCCAACCAGCACCAACGTTTGTTTT 248
|||| ||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 189 GCTTGTTTTATCCACACAACTTATGCAACAGCTTCTCCAACCAGCACCAGCGTTTGTTTT 248
Query 249 CTTGGGCGACAACGCAGCTCTTAACTACGAAATCGTGCTTTACTATGTGTCGAGAATCAA 308
||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 249 CTTAGGCGACAATGCAGCTCTCAACTACGAAATCGTGCTTTACTTTGTGTCGAGAATCAC 308
Query 309 CCTCGCTAATTCATGTTCTCTAAAATGTCGCTCGGATTTGGATAAGAGCATAAATCGTCA 368
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 309 CCTCGCTGATTCATGTTCTCTCAAATGCCGCTCGGATTTGGATAAGAGCATAAATCGTCT 368
Query 369 AACTTCGAAGACAGCTAGTAATCAAGATCAGCAACATTCTTTACTTGTCAATGCTTTCAA 428
||||||||||||||||||| ||| |||||| | | |||||| || ||||||||||||||
Sbjct 369 AACTTCGAAGACAGCTAGTGATCTAGATCACCGATATTCTTCGCTCGTCAATGCTTTCAA 428
Query 429 TGAGAAAATACAGAAGCTTGAAAGCAACTTCCAAAGTTTAGAGAGGACTACATCAATATT 488
||| |||||||| ||||| ||||| |||| ||| | || |||||||| ||||| |||||
Sbjct 429 TGAAAAAATACATAAGCTGGAAAGTGACTTTCAATGCTTGGAGAGGACCACATCGATATT 488
Query 489 AGACATCATCTTTGAAATCCAAGACCTCGAAAGATTCTCTATGATAAACCATCTCGGCAA 548
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 489 AGACATCATCTTCAAAATCCAAGACCTCGAAAGATTCTCCGTGATAAACCATCTCGGCAA 548
Query 549 GTTTCATAACCGCGCAAAGACCTTTAAAAGACTTATTCCGCATAAATACGCTGTTGCGA- 607
||||||||||||| |||||||| ||| ||||| ||||||||| | |||| ||||| ||
Sbjct 549 GTTTCATAACCGCACAAAGACCATTACAAGACCTATTCCGCAGAGATACATTGTTG-GAA 607
Query 608 TACAAATGCCAATGAACCTACCAGAGCCACTACATTGTCTTCCTCTGTGA 657
|||||||||||| |||||| || ||||||||| |||||||||||||||||
Sbjct 608 TACAAATGCCAACGAACCTGCCCGAGCCACTATATTGTCTTCCTCTGTGA 657
> Ahg896917 jgi|Araly1|896917|Al_scaffold_0005_883
Length=804
Score = 601 bits (325), Expect = 2e-171
Identities = 454/516 (88%), Gaps = 10/516 (2%)
Strand=Plus/Plus
Query 144 TGAGAAGGTCGATACAAATGAGGCGATATCTCCATCAAAGAGAAGGCTTCTTTCATCTAC 203
||| ||||||| | || ||||||||| |||||| ||| |||| |||||| ||| ||| ||
Sbjct 297 TGATAAGGTCGGTCCATATGAGGCGAAATCTCCTTCAGAGAGGAGGCTTGTTTTATCCAC 356
Query 204 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAACGTTTGTTTTCTTGGGCGACAACGC 263
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 357 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAGCGTTTGTTTTCTTGGGCGAAAACGC 416
Query 264 AGCTCTTAACTACGAAATCGTGCTTTACTATGTGTCGAGAATCAACCTCGCTAATTCATG 323
|||||| |||||||||||||||||||||| | |||| ||| | | ||||||| |||||||
Sbjct 417 AGCTCTCAACTACGAAATCGTGCTTTACTTTATGTCAAGATTGACCCTCGCTGATTCATG 476
Query 324 TTCTCTAAAATGTCGCTCGGATTTGGATAAGAGCATAAATCGTCAAACTTCGAAGACAGC 383
|||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 477 TTCTCTCAAATGTCGATCGGATTTGGAGAAGAGCAGAAATCGTCAAACTTCGAAGACAGC 536
Query 384 TAGTAATCAAGATCAGCAACATTCTTTACTTGTCAATGCTTTCAATG-AGAAAATACAGA 442
|||| ||||| ||| ||||| ||| || ||||||| || || |||||||||| |
Sbjct 537 TAGTGATCAA---CAGTT---TTCTTCACTCGTTAATGCTTCCA-TGGAGAAAATACATA 589
Query 443 AGCTTGAAAGCAACTTCCAA-AGTTTAGAGAGGACTACATCAATATTAGACATCATCTTT 501
|||||||||| ||||| || || || |||||||||||||| |||||||||||||||||
Sbjct 590 AGCTTGAAAGTGACTTC-AAGAGCTTGGAGAGGACTACATCGATATTAGACATCATCTTC 648
Query 502 GAAATCCAAGACCTCGAAAGATTCTCTATGATAAACCATCTCGGCAAGTTTCATAACCGC 561
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 649 GAAATCCAAGATCTCGAAAGATTCTCTGTGATAAACCATCTCGGCAAGTTTCATAACCGC 708
Query 562 GCAAAGACCTTTAAAAGACTTATTCCGCATAAATACGCTGTTGCGATACAAATGCCAATG 621
||||||||| ||| ||||| ||||||||| | ||||| ||||| |||||||||||||| |
Sbjct 709 GCAAAGACCATTACAAGACCTATTCCGCAGAGATACGTTGTTGGGATACAAATGCCAACG 768
Query 622 AACCTACCAGAGCCACTACATTGTCTTCCTCTGTGA 657
||||| || |||||||||||||||||||| ||||||
Sbjct 769 AACCTGCCCGAGCCACTACATTGTCTTCCACTGTGA 804
> Ahg896908 jgi|Araly1|896908|Al_scaffold_0005_874
Length=807
Score = 586 bits (317), Expect = 7e-167
Identities = 454/519 (87%), Gaps = 13/519 (3%)
Strand=Plus/Plus
Query 144 TGAGAAGGTCGATACAAATGAGGCGATATCTCCATCAAAGAGAAGGCTTCTTTCATCTAC 203
||| ||||||| | |||||||||||| |||||| ||| |||| |||||| ||| ||| ||
Sbjct 297 TGATAAGGTCGGTCCAAATGAGGCGAAATCTCCTTCAGAGAGGAGGCTTGTTTTATCCAC 356
Query 204 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAACGTTTGTTTTCTTGGGCGACAACGC 263
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 357 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAGCGTTTGTTTTCTTGGGCGAAAACGC 416
Query 264 AGCTCTTAACTACGAAATCGTGCTTTACTATGTGTCGAGAATCAACCTCGCTAATTCATG 323
|||||| |||||||||||||||||||||| | |||| ||| | | ||||||| |||||||
Sbjct 417 AGCTCTCAACTACGAAATCGTGCTTTACTTTATGTCAAGATTGACCCTCGCTGATTCATG 476
Query 324 TTCTCTAAAATGTCGCTCGGATTTGGATAAGAGCATAAATCGTCAAACTTCGAAGACAGC 383
|||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 477 TTCTCTCAAATGTCGATCGGATTTGGAGAAGAGCAGAAATCGTCAAACTTCGAAGACAGC 536
Query 384 TAGTAATCAAGATCAGCAACATTCTTTACTTGTCAATGCTTTCAATG-AGAAAATACAGA 442
|||| ||||| ||| ||||| ||| || ||||||| || || ||||||| || |
Sbjct 537 TAGTGATCAA---CAGTT---TTCTTCACTCGTTAATGCTTCCA-TGGAGAAAATTCATA 589
Query 443 AGCTTGAAAGCAACTTCCAAAGTTTAGAGAGGACTAC-A--TCAATATTAGACATCATCT 499
|||||||||| ||||||| || || ||||||||||| | || ||||||||||||||||
Sbjct 590 AGCTTGAAAGTGACTTCCAGAGCTTGGAGAGGACTACTACATCGATATTAGACATCATCT 649
Query 500 TTGAAATCCAAGACCTCGAAAGATTCTCTATGATAAACCATCTCGGCAAGTTTCATAACC 559
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 650 TCGAAATCCAAGACCTCGAAAGATTCTCCGTGATAAACCATCTCGGCAAGTTTCATAACC 709
Query 560 GCGCAAAGACCTTTAAAAGACTTATTCCGCATAAATACGCTGTTGCGA-TACAAATGCCA 618
||||||||||| ||| ||||| || |||||| | ||||| ||||| || |||||||||||
Sbjct 710 GCGCAAAGACCATTACAAGACCTAATCCGCAGAGATACGTTGTTG-GAATACAAATGCCA 768
Query 619 ATGAACCTACCAGAGCCACTACATTGTCTTCCTCTGTGA 657
| |||||| || |||||||||||||||||||||||||||
Sbjct 769 ACGAACCTGCCCGAGCCACTACATTGTCTTCCTCTGTGA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5