BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29390.1
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936770 jgi|Araly1|936770|scaffold_500961.1 2409 0.0
> Ahg936770 jgi|Araly1|936770|scaffold_500961.1
Length=1819
Score = 2409 bits (1304), Expect = 0.0
Identities = 1663/1827 (91%), Gaps = 62/1827 (3%)
Strand=Plus/Plus
Query 45 TCAGAGCACGTCTGTAAGATGACAGAGGACAACGATGAGGCTAGGGTTCCTCTC-AGCGA 103
|||||| ||| || ||||||||||||||||||||||||| |||||||| ||| | ||| |
Sbjct 3 TCAGAGAACGGCTCTAAGATGACAGAGGACAACGATGAGCCTAGGGTTTCTC-CAAGCAA 61
Query 104 CTCGTCTACAACGAACGATGCTTCTCGAACGAGACAAAGGAGAAAGAGAAAGTGGGATAA 163
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 62 CTCGTCTACAACGAACGATACTTCTCGAACGAGGCAAAGGAGAAAGAGAAAGTGGGATCA 121
Query 164 GCCAGCGGAGCAACTTGTTGCGGCTGGAGTTGCGTTTCCTCAGTTACTTCCTTTAGGCAA 223
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GCCAGCGGAGCAGCTTGTTGCGGCTGGAGTTGCGTTTCCTCAGTTACTTCCTTTAGGCAA 181
Query 224 CACTATGAATGTTCCTTCTATGTCACCATTGCTCCAAACGCTTTCGGTGCCTCTAGCAGT 283
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||
Sbjct 182 CACTATGAATGTTCCTTCTATGTCACCATTGCTCCCAACGCTTTCTGTGCCTCCACCAGG 241
Query 284 TCCAAAAGTTAATCAACCTAAAATCCAGGATGAGGTGATCATAGCGCGAGAAATTGTTAT 343
||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||
Sbjct 242 TCCAAAAGTTAATCAACATAAGATACAGGATGAATTGATCATAGCGCGAGAAATTGTTAT 301
Query 344 CAACGATGCTGAGGCTTCTCTTAGGCACAGGCTTACCAAACGCTCAACTCAAGAAGATAT 403
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 302 CAACGATGCTGAGGCTTCTCTTAGGCACAAGCTTACTAAACGCTCAACTCAAGAAGAAAT 361
Query 404 TCAGAGGTCTACCGGTGCTGTGGTGATTACTAGGGGCAAGTATCGTCCTCCAAATGCACC 463
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCAGAGGTCTACTGGCGCTGTGGTGATTACTAGGGGCAAGTATCGTCCTCCAAATGCACC 421
Query 464 TCCTGATGGTGAAAAGCCATTATATCTTCACATATCTGCCGCTGCCCAGTTGCAGTTAAA 523
|| |||||||||||||||||| ||||||||||||||||| |||| || ||||||||
Sbjct 422 TCTTGATGGTGAAAAGCCATTGTATCTTCACATATCTGCTGCTG-CC-----CAGTTAAA 475
Query 524 AGAGACTACAGAACGTATCTTAGCAGTTGATCGTGCAGCAGCTATGATTGAGGAGATGAT 583
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 476 CGAGACTACAGAACGTATTTTAGCAGTTGATCGTGCAGCAGCTATGATTGAGGAGATGCT 535
Query 584 GAAACAGAAATCAATTTCACAGATCGGATCAGTTGGTTTACAGACGGTCAAGATGCTGAG 643
|||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||| |||
Sbjct 536 GAAACAGAAATCAATTTCACAGGTCGGATCAGTTGGGTTACCGACTGTCAAGATGCAGAG 595
Query 644 CACATGCGTATATTTGGGTTTCGAAGCTGACCCATCATCTAATGTTGCTGCTCGTATTCG 703
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CACATGCGTGTATTTGGGTTTCGAAGCTGACCCATCATCTAATGTTGCTGCTCGTATTCG 655
Query 704 TGGGCCTAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCAACTGTTGTATT 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 TGGGCCTAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCAACTGTTGTACT 715
Query 764 AAGAGGGCGTGGTTCAGGAAGCCTTGAGAATCAACATGGAGATGAAGCACAGCTACCGCT 823
||||||||| ||||| |||||| ||||||| ||||||||||| |||||||| ||||||||
Sbjct 716 AAGAGGGCGCGGTTCTGGAAGCATTGAGAACCAACATGGAGAAGAAGCACAACTACCGCT 775
Query 824 GCATCTATTATTATCCGGCAGCAACCCAAAGAGCATCGACGATGCAAAACGTTTAGCTGA 883
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 776 GCATCTATTATTGTCCGGCAGCAACCCAAAGACCATCGACGATGCAAAACGTTTAGCTGA 835
Query 884 GAATCTTATGGATACAATCAGTGTAGAATTTGGGGCTTCAAGGGTTTCCTCAAGCAAGGT 943
||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 836 GAATCTTATGGATACGATCAGTGTAGAATTTGGGGCATCAAGGATTTCCTCAAACAAGGT 895
Query 944 GTATGGTGCAGTACCACCACCACAGCAACTGA-TTTCTGGAGCTCCGGGTTCTGACCAGG 1002
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||
Sbjct 896 GTATGGTGCAGTACCACCACCACAGCAACT-ACTTTCTGGAGCTCCAGGTTCTGAAAAGG 954
Query 1003 AG-AA-C-CAAAATTTGATTTCAACGTATGGTTTGATGACATCGATACCCATCACAGCAC 1059
|| || | | |||||| | |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 955 AGCAAACGCCAAATTTAACTTCAACATATGGTTTGATGACATCGATACCAATCACAGCAC 1014
Query 1060 CACCATA-CGCTGTTAGTTCGTTTCCAGTTACTCCAGCAACAAGTCTTTATCCTCAGTTT 1118
||||| | | |||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1015 CACCA-AGCACTGTTAGTCCGTTTCCAGTTACTCCAACTACAAGTCTTTATCCTCAGTTT 1073
Query 1119 CCAGTAATGCAATCTCTAGGAATATCAAATGGTGG-C-C--CC-TC---G-C-----AG- 1163
|||||||||||| |||||||||||||||||||||| | | || || | | ||
Sbjct 1074 CCAGTAATGCAACCTCTAGGAATATCAAATGGTGGGCACTTCCATCCAAGTCCTGTCAGT 1133
Query 1164 --C---C--C--GTGGCTGGAGGAACTAGCTATAGTGGGTATGCTGGAATATACCCTCAA 1214
| | | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TACTTACAGCCCGTGGCTGGGGGAACTAGCTATAGTGGGTATGCTGGAATATACCCTCAA 1193
Query 1215 GCCACACCATTGCAACAAGTTGCTCAAGTCCTTAAGCAATCAATTTCTCCTGTTATCTCT 1274
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 GCCACACCACTGCAACAAGTTGCTCAAGTCCTTAAGCAATCTATTTCTCCTGTTATCTCC 1253
Query 1275 ACTGTGCCCCCTACTATGTTGACAGCTACGTCCTTATCGATCCCAAGTGATAATGCAAGT 1334
||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| | |||||
Sbjct 1254 ACTGTGCCCCCTACTATGTTGCCAGCTACATCCTTCTCGACCCCAAGTGATATTTCAAGT 1313
Query 1335 AATGAAATGGAAAGGCGTCCACCCCGGAAGCGAAAGTTTCAGGAACTTCCAGCTGATTGT 1394
|| |||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1314 AAGGAAAAGGAAAGGAACCCACCCCGAAAGCGAAAGTTTCAGGAACTACCAGCTGATTGT 1373
Query 1395 AAGGTTCCAGAAAAAGACAAACAGCAATCGGAGTTAGCAATGACAGGTGATGTTACTCCA 1454
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1374 AAGGTTCCAGCAAAAGCCAAACAGCAATCAGAGTTAGCAATGACAGGTGATGTTACTCCA 1433
Query 1455 -----T------------C-A---GCAAATAGAGTGCGGTCGCCGCCTTCACCAAGATCT 1493
| | | |||||||||||||||||||| |||||||||||||||
Sbjct 1434 AAGAATATAGTTGAGGAGCCATCAGCAAATAGAGTGCGGTCGCCTCCTTCACCAAGATCT 1493
Query 1494 GTAATGCCTCCTCCTCCACCAAAGACCATCGCACCACCGCCTTCTAAGACCATGTCTCCT 1553
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1494 GTGATGCCTCCTCCTCCACCAAAGACCATCACACCACCGCCTTCTAAGACCGTGTCTCCT 1553
Query 1554 CCATCATCAAAAAGCATGCTTCCTCCACCACCACGTTCTAAGACCATGTCTCCTCTATCA 1613
| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1554 CAATCGTCAAGAAGCATGCTTCCTCCACCACCACCTTCTAAGACCATGTCTCCTCTATCG 1613
Query 1614 TCAAAAAGCATGCTTCCTCCACCACCGCGATTTACACTGACAACTCAACGTTCAAGATTA 1673
|||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 1614 TCAAAAAGCATGCTTCCTCCACCACCACGATTTACACCGACAACTCAACCTTCAAGATTA 1673
Query 1674 CAGGACAACCACATCAGTGTAAAGAAACCAAATCCAGTTCCAGATACGTTAATAAAGCTG 1733
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1674 CAGGACAACCACATCACTGTAAAGAAACCAAGTCCAGTTCCAGATACGTTGATAAAGCTG 1733
Query 1734 ATGGAATATGGAGACGATGAAGACGATGATGACGATCCTGATGAGCCATTGACAA-CTAG 1792
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||
Sbjct 1734 ATGGAATATGGAGACGATGAAGACGATGATGACGATTCTGATGAGACATTGACAATC-AG 1792
Query 1793 ATCGTGACAGTGTATTAGATTACAGAA 1819
||||||||| ||| |||||||||||||
Sbjct 1793 ATCGTGACAATGTTTTAGATTACAGAA 1819
Score = 102 bits (55), Expect = 9e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 1525 CACCACCGCCTTCTAAGACCATGTCTCCTCCATCATCAAAAAGCATGCTTCCTCCACCAC 1584
||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1579 CACCACCACCTTCTAAGACCATGTCTCCTCTATCGTCAAAAAGCATGCTTCCTCCACCAC 1638
Query 1585 CACG 1588
||||
Sbjct 1639 CACG 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5