BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29400.1
Length=2338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484709 jgi|Araly1|484709|fgenesh2_kg.5__701__AT3G29400.1 2796 0.0
> Ahg484709 jgi|Araly1|484709|fgenesh2_kg.5__701__AT3G29400.1
Length=2054
Score = 2796 bits (1514), Expect = 0.0
Identities = 1861/2021 (92%), Gaps = 54/2021 (3%)
Strand=Plus/Plus
Query 306 ATGGGAGAGTTTGAGGTAGATGGAGAAGAGAAACTGATTGTTGCTGCTAAGTATCTTGTT 365
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 39 ATGGGAGAGTTTGAGGTAGATGGAGAGGAGAAGTTGATTGTTGCTGCTAAGTATGTTGTG 98
Query 366 AAGGAACTTAGATCTGGTAAGAGTCTTACTAAAAATGCTAAGAATGTTTTAGGCAATCTC 425
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 99 AAGGAACTTAGATCTGGTAAGAGTCTTACTAAAAATGCTAAGAAGGTTTTGGGGAATCTC 158
Query 426 TTATTAGAGCTT-TCTCGTGTGGTGATAGCTGAGGATACTCAGGATAGAGATGAGGAAGA 484
||||| ||| || ||||||||||| |||||| | |||||||||||||||||||
Sbjct 159 TTATTGGAG-TTGTCTCGTGTGGTCATAGCT---G------AGGATAGAGATGAGGAAGA 208
Query 485 TGAAATAGGTGAGATTGAGGAAAGGCTTAATGTTGTTAGTGAGAAGATTATGACTAGAGA 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 209 TGAAATAGGTGAGATTGAGCAAAGGCTTAATGTTGTTAGTGAGAAGATTATGACTAGGGA 268
Query 545 AGTCGATGAATCAATGATTTGGGATTTAGGTTCAGATGAAGGTAATCTGTATTTGGATGC 604
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 269 AGTCGATGAATCGATGATTTGGGATTTGGGTTCAGATGAAGGTAATCTGTATTTGGATGC 328
Query 605 TGTGAATGAGTTGAGAAG--T--TTG-A---TTG-A-------TC-GG-TTA--G-A--C 641
||||||||||||||| || | ||| | ||| | || || ||| | | |
Sbjct 329 TGTGAATGAGTTGAGGAGTTTGATTGAACGGTTGAACGGTTCTTCGGGTTTAGGGAAGGC 388
Query 642 -GGAAGTGAGGAGCTTTCTTTAAGAAAAGCTCATGATGTTCTTCAAATAGCTATGGCACG 700
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 389 GGGAAGTGAGGAGCTTTCTTTAAGAAAAGCTCATGATGTTCTTCAAACGGCGATGGCACG 448
Query 701 GCTTGAGGATGAGTTTAAGCATCTTCTTGTGGAGAATAGATTGCCTTTTGAGCTTGAACA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GCTTGAGGATGAGTTTAAGCATCTTCTTGTGGAGAATAGATTGCCTTTTGAGCTTGAACA 508
Query 761 TTCGTCGTTTCGGTCTATTGAAGCGGATCATGGTGTGGAGGAAGAGTCCATGGCTTCTTT 820
|||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||| ||
Sbjct 509 TTCGTCGTTTCGGTCTGTTGAAGCGGATCATGGTGTGGAAGAAGAGGCCATAGCTTCGTT 568
Query 821 TGGTGCTGCTTCTACTGAGGATTTGATTCTTGGAAGTAATAATGATAGTAGGAGAAACTC 880
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 569 TGGCGCTGCTTCTACTGAGGATTTGATTCTTGGAAGCAATAACGATAGTAGGAGAAACTC 628
Query 881 AGGGGACGTTGTGGTTGATTTGGTGAATCCTGATGTTATATTAGATCTCAAGAACATTGC 940
|||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 629 AGGGGAAATTGTGGTTGATTTGATTAATCCTGATGTTATATCAGATCTCAAGAACATTGC 688
Query 941 GAAT-ACTATGATTGCTTCAGGGTATGACCGTGAGTGTATTCAGGTGTGTACAATGGTTA 999
|| |||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||
Sbjct 689 -AACCACTATGATTGCTTCGGGGTATGACCGCGAGTGTATCCAGGTATGTACAATGGTTA 747
Query 1000 GAAAAGATGCTTTGGATGAGTTT-TTGTATAACCATGAGGTTGAGAAGTTGAGTATTGAA 1058
|||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 748 GAAAAGATGCGTTGGATGAGTTTCTT-TATAACCACGAGGTCGAGAAGTTGAGTATTGAA 806
Query 1059 GATGTTTTGAGGATGGATTGGGCGACGTTGAATACGAATATCAAGAAATGGGTTCGGGTT 1118
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 807 GATGTTTTGAGGATGGATTGGGCTACGTTAAATACGAATATCAAGAAATGGGTTCGGGTT 866
Query 1119 ATGAGAGATATCGTCCAGGTATATCTCTTGAGTGAGAAGTCTCTGGATAATCAGATCTTT 1178
||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| |||
Sbjct 867 GTGAGAAATATCGTCCAGATATATCTCTTGAGCGAGAAGTCTCTGGACAATCAGATATTT 926
Query 1179 GGAGACTTGAATGAGATCGGTCTAACATGTTTCGTCGATACTGTGAAGGCTCCGATGATG 1238
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGGGACCTAAATGAGATCGGTCTAACATGTTTCGTCGATACTGTGAAGGCTCCGATGATG 986
Query 1239 CAGTTGCTTAATTTTGGTGAAGCTGTGTCTCTTGGTCCACGACAACCTGAGAAATTGCTT 1298
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 987 CAGTTGCTCAATTTTGGTGAAGCTGTGTCTCTTGGTCCACGACAGCCCGAGAAATTGCTT 1046
Query 1299 AGGATTCTTGAAATGTATGAGCTAGCATCTGAGCTTTTACCAGAGATCGATGCTTTGTTC 1358
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1047 AGGATTCTTGAAATGTACGAGCTAGCATCCGAGCTTTTACCAGAGATCGATGCTTTGTTC 1106
Query 1359 TTGGATCATCCCGGTTCGTCCGTAAGAACCGAATACAGGGAAGTGATGAGGAGACTTGGG 1418
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1107 TTGGATCATCCCGGTTCATCCGTAAGAACAGAATATAGGGAAGTGATGAGGAGACTCGGG 1166
Query 1419 GATTGTGCAAGAACAACGTTTCTTGAATTCAAAAGTGCGATTGCAGCGGATGTCTCATCG 1478
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1167 GACTGTGCAAGAACAACGTTTCTTGAATTCAAAAGTGCGATTGCATCGGATGTCTCATCG 1226
Query 1479 CATCCTTTCCCTGGAGGCGCGGTTCACCCGCTTACAAACTACGTGATGAATTACCTCATG 1538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1227 CATCCTTTCCCTGGAGGCGCGGTTCACCCGCTTACAAATTACGTGATGAATTACCTCATG 1286
Query 1539 GCTCTAACAGATTTCAAACACACGCTCGACTCTCTTCTAATGGAACATGATGATGCAGAA 1598
|| ||||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1287 GCGCTAACGGATTTCAGCCACACGCTCGACTCTCTTCTAATGGAACACGACGATGTAGAA 1346
Query 1599 GATCTCACAATACCACCATCGCCGGATATTATCAATCCCGTGATGGTCGAAGAAGAGTCT 1658
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 GATCTCACAATACCTCCATCGCCGGATATTATCAATCCCGTGATGGTCGAAGAAGAGTCA 1406
Query 1659 ACCTACGAAAACTCCTCTTCACCGGAGAAATTTCTGGCAATGACCCGACATTTCTACTCC 1718
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1407 ACCTACGAAAACTCTTCTTCACCTGACAAATTTCTGGCAATGACCCGACATTTCTACTCC 1466
Query 1719 ATAACCTCTGTCCTCGAAGCCAACCTTCAAGAGAAATCAAAACTATACAAAGATGTCTCT 1778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ATAACCTCTGCCCTCGAAGCCAACCTTCAAGAGAAATCAAAACTATACAAAGATGTCTCT 1526
Query 1779 CTACAACACATTTTTCTCCTCAACAACATACACTACATGACCCGGAAAGTGCTAAAGTCC 1838
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1527 CTACGACACATTTTTCTCCTCAACAACATACACTACATGACCCGAAAAGTACTAAAGTCC 1586
Query 1839 GAGCTGAGACACATCTTCGGCGACAAATGGAACCGAAAACATACATGGAAGTTTCAGCAG 1898
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1587 GAGCTGAGACATATCTTCGGTGACAAATGGAACCGAAAACATACATGGAAGTTTCAGCAG 1646
Query 1899 CAAGCAACAGAGTACGAACGCGCAACCTGGCTCCCTGTCCTATCGTTCCTCAAGGACGAT 1958
||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1647 CAATCAATAGAGTATGAACGCGCAACCTGGCTCCCTGTCCTATCCTTCCTCAAGGACGAT 1706
Query 1959 GGTTCAGGTTCTGGTCCCGGTTCTGGCTCAGGTTCTGGTTCAAAGAATCTACGCCCGAGG 2018
| | ||||| | | | | || ||| | ||||| |||||||||||||| |||
Sbjct 1707 --T-CTGGTTCCAG-C----T-CAGG-TCA--T---GGTTCGAAGAATCTACGCCCAAGG 1751
Query 2019 GAGCGGTTCCAAGGATTCAACACTGCGTTCGAGGAAGTGTACAAAGCGCAAACCGGATGG 2078
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 1752 GAGCGGTTCCAAGGATTCAACACTGCGTTTGAGGAAGTGTATAAGGCGCAAACCGGGTGG 1811
Query 2079 CTAATTTCGGACGAGGGGCTAAGAGAAGATGTAAGGACAAAGGCGTCCATGTGGGTGATT 2138
||||| || || ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1812 CTAATATCCGATGAGGGGCTAAGAGAAGACGTGAGGACAAAGGCGTCAATGTGGGTGATT 1871
Query 2139 CAAGCGTATTGGACATTTTACAGTAGACACAAGAACAGTGTCAGTGAAAGGTATATAAAG 2198
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 1872 CAAGCGTATTGGACATTTTACAGTAGACACAAGAACAATGTGAGTGAAAGGTATATTAAG 1931
Query 2199 TACACTACTGATGATATTGAGAGACTCTTGTTGGATCTCTTTGCTGGTTCTTCTAAATCC 2258
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1932 TACACTACTGATGATCTTGAGAGACTCTTGTTGGATCTCTTTGCTGGTTCTCCTAAATCC 1991
Query 2259 TTGAACAATTCTTATAGAAGATGATGATAAATTGTGTTATG 2299
||||||||||||||||||||||||| |||||||||||||||
Sbjct 1992 TTGAACAATTCTTATAGAAGATGATTATAAATTGTGTTATG 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88064646440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5