BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29520.1
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484927 jgi|Araly1|484927|fgenesh2_kg.5__919__AT3G29520.1 259 1e-68
> Ahg484927 jgi|Araly1|484927|fgenesh2_kg.5__919__AT3G29520.1
Length=355
Score = 259 bits (140), Expect = 1e-68
Identities = 168/182 (92%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 1 AATCTAATGGCTCAGTCTATGATTACAATGCCTCCTACTAGATATGGGAAATAAGATTGC 60
|||||||||||||||||||| |||||| |||||||||| | ||| ||| || ||||||||
Sbjct 1 AATCTAATGGCTCAGTCTATAATTACATTGCCTCCTACGAAATACGGGGAAGAAGATTGC 60
Query 61 AAAATAAGAGGATCAATCAACAATCATTCAAAATTTAGTTATTTGAAGACTGTTAAAGAA 120
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAGATATGAGGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGACTGTTAAAGAA 120
Query 121 ATTCTCTCTGACTCGTTATTCACTAGGCTGAAAACTACTTTTCTTGGCCCGATCATCAAA 180
|| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 121 ATCCTCTCTGACTCGTTATTCAGTAGGTTGAAAACTATTTTTCTTGGCCCGATCATCAAA 180
Query 181 GG 182
||
Sbjct 181 GG 182
Score = 93.5 bits (50), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 291 GAGATATGGTTTTGCATCAACAACAAGCCGATGAGATTCTCATTGA-TGAGTTTCATCTT 349
||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 GAGATTTGGTTTTGCTTCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17170015050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5