BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29580.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888 1094 0.0
Ahg887442 jgi|Araly1|887442|Al_scaffold_0489_1 479 2e-134
Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 67.6 2e-10
Ahg914971 jgi|Araly1|914971|Al_scaffold_0001_5225 63.9 2e-09
Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1 56.5 3e-07
> Ahg896922 jgi|Araly1|896922|Al_scaffold_0005_888
Length=921
Score = 1094 bits (592), Expect = 0.0
Identities = 824/933 (88%), Gaps = 28/933 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAATCTAGACGATAACAAGTTCACTTGGGTGATTAAGAATGTCCCAACGTTGA-A 59
||||||||| ||| ||||||||||||||||||||||||||| || ||| | | |||| |
Sbjct 1 ATGGGAAATTTAGTCGATAACAAGTTCACTTGGGTGATTAATAAAGTCTCTTCTTTGACA 60
Query 60 TTCAGATATGCTTTTTTCGAATTATTTTGTCATCGGTGGCTGCAGCTGGCGTGTTGTGGC 119
|||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 61 -TCAGATCTGCTTTTTTCGAATTATTTTGTGATCGGTGGTTGCAGCTGGCGTGTTGTGGC 119
Query 120 ACATTCCAAAGAAAATAACTTTAAAGAATCTTTATCTCTAACTCTGATTGTTGCCGAAGA 179
|| ||||| ||| |||||||||||||| ||||||||| |||||||||||||| | |||||
Sbjct 120 ACTTTCCAGAGACAATAACTTTAAAGACTCTTTATCTTTAACTCTGATTGTTACTGAAGA 179
Query 180 TTCTGCTCAAAAAATGGGTTG-TGGGTGGAGTAGATACGCTAAAATTATC-TTTACTCTA 237
|||||||||||||||| | || ||| |||||||||||||||||| || || |||||||||
Sbjct 180 TTCTGCTCAAAAAATGAG-TGTTGGATGGAGTAGATACGCTAAAGTT-TCATTTACTCTA 237
Query 238 GTCAATCAAATTTCTGAAATTCTCTCTCAACGTATAGAAACCATGTTTGATCAAAAGAGT 297
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 238 ATCAATCAAATTTCTGAAATGCTCTCTCAACGTATAGAAACCATGTTTGATCAAAGGAGT 297
Query 298 TCGGTTTTCAGTAGCGAAACTATGTTTTCTATTGGGAAA-TT--TGATGAACACTTTGCT 354
|||||||||||| | ||||| |||||||| ||||| ||| || |||||| || ||||
Sbjct 298 TCGGTTTTCAGTTGTGAAACCATGTTTTCCATTGGTAAACTTAATGATGATCA---TGCT 354
Query 355 GGATTTATT-GTAAATGGAGAAATCAAGATTGTTGTTGAGTTTCTTGAAATTATTGACAA 413
|||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 355 GGATTT-TTGGTGGATGGAGAAATCAAGATTGTTGTTCAGTTTCTTGAAATTTTTGACAA 413
Query 414 ATTAGTGTTATCTAAAGAATCAAACCCGCCTTTTAAAAAGACAAAGCTAAACAATGATGG 473
||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 414 ATTAGTGGTATCTAAAGAATCAAACCAGCCTTTTAAAAAGACAAAGCTAAATGATGATGG 473
Query 474 TGAAGTGTCTAAAGATTTGATTAGGGAGGTTCCAGTAATAATGGAAAGCATTGTT-GTTA 532
|||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 474 TGAAGTGTCTAAAGATTTGATTAGGGAGGTTCCAGTAATAATTTCTTCC-TTCACAGTTT 532
Query 533 ATG-GGTTTCATGTTCTTC-CTTCACAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACA 590
|| || | | | || || ||| |||||||||||||||||||||||||||||||||||
Sbjct 533 -TGTGGATCCTTTTTTTTTACTTG-CAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACA 590
Query 591 TCCAGATGTTGCAA-AGGAGTTTCGTCC-AACGAACC-GGATTGTGAAGACAGCGTATAT 647
|||||| ||||| || ||||| ||| || ||||| || |||| |||||||| || ||
Sbjct 591 TCCAGACATTGCATTAG-AGTTTTTTCCGAA-GAACCCGG-TTGTCAAGACAGCTTACAT 647
Query 648 GAATGTTCTACTCAGTTTGATTGAGACTTTGCGCCAGTCGCCTAGAGAAATCTCTAAGAA 707
||||||||||||||||||||||||||||||| ||||| ||||| ||||||| || ||| |
Sbjct 648 GAATGTTCTACTCAGTTTGATTGAGACTTTGGGCCAGCCGCCTCGAGAAATATCAAAGGA 707
Query 708 TGATCTGGATGGTGCATGTGGTTTACTAAGATCCATGAAAGAGGCTGGATTTAAGTTGGA 767
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGATCTGGCTGGTGCATATGGTTTACTAAGATCCATGAAAGAGGCTGGATTTAAGTTGGA 767
Query 768 TTGGTTGGagaagaaactgaatgaagtgttagaaaagaaggagaaagaagaaag-ttatg 826
|||||||||||| ||||||||||| |||||| |||||||||||| |||||| | |||||
Sbjct 768 TTGGTTGGAGAATAAACTGAATGAGGTGTTAAAAAAGAAGGAGAGCGAAGAA-GCTTATG 826
Query 827 agactcgaatgcgagaaatcgaggaagagatgaagGACTTGAAGGCAAAAGCGTTGGACG 886
|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 827 AGACTCGAATGCGAGAAATCGAGGAAGAGATGAAAGACTTGAAGGAAAAAGTGTTGGACG 886
Query 887 TGGGAGCTCCTTTAAGGTTAGATGATGTTGTCT 919
||| ||||||||||||||||||||||||| |||
Sbjct 887 TGGCAGCTCCTTTAAGGTTAGATGATGTTTTCT 919
> Ahg887442 jgi|Araly1|887442|Al_scaffold_0489_1
Length=363
Score = 479 bits (259), Expect = 2e-134
Identities = 331/365 (91%), Gaps = 8/365 (2%)
Strand=Plus/Plus
Query 559 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGATGTTGCA-AAGGAGTTTCGTCC 617
|||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct 1 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTA-GAGTTTTTTCC 59
Query 618 -AACGAA-CCGGATTGTGAAGACAGCGTATATGAATGTTCTACTCAGTTTGATTGAGACT 675
|| ||| |||| |||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 60 GAA-GAACCCGG-TTGTCAAGACAGCTTACATGAATGTTCTACTCAGTTTGATTGAGACT 117
Query 676 TTGCGCCAGTCGCCTAGAGAAATCTCTAAGAATGATCTGGATGGTGCATGTGGTTTACTA 735
||| ||||| ||||| ||||||| || ||| ||||||||| |||||||| ||||||||||
Sbjct 118 TTGGGCCAGCCGCCTCGAGAAATATCAAAGGATGATCTGGCTGGTGCATATGGTTTACTA 177
Query 736 AGATCCATGAAAGAGGCTGGATTTAAGTTGGATTGGTTGGagaagaaactgaatgaagtg 795
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 178 AGATCCATGAAAGAGGCTGGATTTAAGTTGGATTGGTTGGAGAATAAACTGAATGAGGTG 237
Query 796 ttagaaaagaaggagaaagaagaaag-ttatgagactcgaatgcgagaaatcgaggaaga 854
||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 238 TTAAAAAAGAAGGAGAGCGAAGAA-GCTTATGAGACTCGAATGCGAGAAATCGAGGAAGA 296
Query 855 gatgaagGACTTGAAGGCAAAAGCGTTGGACGTGGGAGCTCCTTTAAGGTTAGATGATGT 914
|||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 297 GATGAAAGACTTGAAGGAAAAAGTGTTGGACGTGGCAGCTCCTTTAAGGTTAGATGATGT 356
Query 915 TGTCT 919
| |||
Sbjct 357 TTTCT 361
> Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742
Length=954
Score = 67.6 bits (36), Expect = 2e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATCTAGACGATAACAAGTTCACTTGGGTGATTAAGAAT 45
||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAAT 45
> Ahg914971 jgi|Araly1|914971|Al_scaffold_0001_5225
Length=510
Score = 63.9 bits (34), Expect = 2e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 527 TTGTTAATGGGTTTCATGTTCTTCCTTCACAGGT 560
||||||||||||||||||||||||||||||||||
Sbjct 137 TTGTTAATGGGTTTCATGTTCTTCCTTCACAGGT 170
> Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1
Length=1246
Score = 56.5 bits (30), Expect = 3e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 16 GATAACAAGTTCACTTGGGTGATTAAGAAT 45
||||||||||||||||||||||||||||||
Sbjct 87 GATAACAAGTTCACTTGGGTGATTAAGAAT 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5