BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29590.1
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484714 jgi|Araly1|484714|fgenesh2_kg.5__706__AT3G29590.1 1742 0.0
> Ahg484714 jgi|Araly1|484714|fgenesh2_kg.5__706__AT3G29590.1
Length=1341
Score = 1742 bits (943), Expect = 0.0
Identities = 1240/1374 (90%), Gaps = 57/1374 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAATTTCAACTCAGCCGTTAACATACTTGAGGTGGTCCAAGTTAGCCCGCCGTCT 60
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1 ATGGTGAATTTCAACTCAGCCGTTAACATACTTGTGGTGGTCCGAGTTAGCCCGCCGTCT 60
Query 61 TCTAACTCGCTCACACTCCCACTCACTTACTTTGACTTGGGTTGGCTCAAACTTCACCCC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCTAACTCGCTCACACTCCCACTCACTTACTTTGACTTAGGTTGGCTCAAACTTCACCCC 120
Query 121 GTTGACCGAGTTCTTTTCTACCACGTCCCCGAGCTGACTCGctcttctctcatctct-aa 179
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||
Sbjct 121 GTTGACCGAGTTCTTTTCTACCGCGTCCCCGAGCTGACTCGCTGTTCTCTCATCACTCAA 180
Query 180 acttaagtcctctctctcagccacgctcctccactatctcccactcGCCGGCCGCCTCGT 239
| | |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 181 A-TCAAGTCCTCTCTCTCAGTCACGCTCCTCCACTATCTCCCGCTCGCTGGCCGCCTCGT 239
Query 240 GTGGGATTCAATCAAAACCAAACCATCCATTGTCTATTCTCCTGACGACAAAGATGCCGT 299
|||||| |||||| | |||||||| |||||||||||||||||| ||||| |||||| |||
Sbjct 240 GTGGGACTCAATCGACACCAAACCGTCCATTGTCTATTCTCCTAACGACGAAGATGGCGT 299
Query 300 GTATCTCACGGTAGCTGAGTCTAACGGTGACCTTTCCCATCTTTCCGGAGATGAACCTCG 359
|||||||||||||||||||||||| ||||| || |||||||| |||||||| |||||||
Sbjct 300 GTATCTCACGGTAGCTGAGTCTAATGGTGATCTCTCCCATCTAGCCGGAGATAAACCTCG 359
Query 360 TCCCGCCA-CGGAGTTTCATTCTTTAGTCCCTGAGTTACCGGTTTCCGACGAATCAGCTC 418
||||||| | || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 360 CCCCGCCATC-GATTTTCATCCTTTAGTCCCTGAGTTACCGGTTTCCGACGAATCGGCTG 418
Query 419 GCGTTCTCGCCGTTCAGGTAACG-TTTTTCCCAAACCAAGGATTTTCTCTCGGCGTAACC 477
|||||||||||||||| ||||| |||||||| |||||||| |||| |||||||||||||
Sbjct 419 GCGTTCTCGCCGTTCAAATAACGTTTTTTCCC-AACCAAGGGTTTTGTCTCGGCGTAACC 477
Query 478 GCACATCATGCCGTTTTAGATGGTAAAACAACAGCCATGTTTCTCAAAGCATGGGCTCAC 537
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 478 GCACATCATGCCGTTTTAGACGGAAAAACAACAGCCATGTTTCTCAAAGCATGGGCTCAC 537
Query 538 AACTGTAAACAAGAACAAGAA-G----C---T--CT--GCCAC----AC--GATCTAGTA 579
||||||||||||||||||||| | | | || ||| | || |||||| |
Sbjct 538 AACTGTAAACAAGAACAAGAATGTGGTCACATTGCTCTGCCTCTGCCACATGATCTAATC 597
Query 580 CCGTCTTTAGATCGTATCATTGTTCAAGACCCAACGGGACTCGAGACAAAACTCTTGAAC 639
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCTTCTTTAGATCGTACCATTGTTCAAGACCCAACGGGACTCGAGACAAAACTCTTGAAC 657
Query 640 CGGTGGATATCAGCTTCCAACAACAAACCAAGCTTAAAACTGTTTCCTTCCAAAATAATT 699
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CGTTGGATATCAGCTTCCAACAACAAACCAAGCTTAAAACTGTTTCCTTCCAAAATAATC 717
Query 700 GGATCCGATATTCTCCGAGTCACGTACCGGTTAACTCGAGAAGACATCAAGAAGCTACGT 759
|||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 718 GGATCCGACATTCTCCGAGTCACGTACCGGTTAACTCAAGAAAACATCAAGAAACTACGT 777
Query 760 GAACGAGTGGAGACCGAGTCACACGCTAAGCAGCTCCGTTTGTCGACTTTTGTCATTACT 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 GAACGAGTGGAGACCGAGTCACACGCTAAGCAGCTCCGTTTGTCGACTTTTGTCATCACT 837
Query 820 TACGCTTACGTTATAACATGCATGGTGAAGATGCGTGGAGGTGACCCGACCCGGTTTGTG 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TACGCTTACGTTATAACATGCATGGTGAAGATGCGTGGAGGTGACCCGACCCGGTTTGTG 897
Query 880 TGCGTTGGTTTTGCATCAGACTTTCGGTCACGGTTAAACCCTCCGTTACCGCCGACGTTC 939
|| |||||||||||||| ||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct 898 TGTGTTGGTTTTGCATCGGACTTCCGGTCCCGGTTAAACCCTCTGTTACCGTCGACATTC 957
Query 940 TTCGGGAACTGCATTGTCGGGTCGGGAGATTTCGACGTGAAAGCAGAACCAATATTGGAA 999
|||||||||||||||||||||||||||||||||||| | | |||| ||||
Sbjct 958 TTCGGGAACTGCATTGTCGGGTCGGGAGATTTCGAC---A--G-AGAA--------GGAA 1003
Query 1000 GAAGGAGAAGGAAAAGGTTTCATCACGGCGGTGGAGACTTTGACCGGATGGGTCAACGGA 1059
|||| ||| ||| ||| ||| ||| ||||||||||||||||||||||
Sbjct 1004 -AAGGT-----------TTT-ATCTCGGTGGTCAAGAGTTTGACCGGATGGGTCAACGGA 1050
Query 1060 TTGTGTCCGGAGAATATAGAGAAGAATATGCTTTTACCGTTTGAAGCGTTTAAGAGGATG 1119
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1051 TTGTGTCCGGAGAATATAGAGAAGAATATGCTTTTGCCGTTCGAGGCGTTTAAGAGGATG 1110
Query 1120 GAACCGGGAAGGCAAATGATATCGGTTGCTGGGTCGACCCGGTTAGGGATTTACGGGTCT 1179
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1111 GAACCGGGAAGACAAATGATTTCGGTTGCTGGGTCGACCCGGTTAGGGATTTATGGGTCG 1170
Query 1180 GATTTTGGGTGGGGAAAACCGGTCAAGGTAGAGATTGTGACGATTGATAAGGATGCTTCG 1239
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||
Sbjct 1171 GATTTTGGGTGGGGAAAACCGGTTAAGGTAGAGATTGTGACAATTGATAAGGACGGTTCG 1230
Query 1240 GTTTCATTGTCGGAGAGTGGAGATGGAAGTGGTGGTGTTGAGGTTGGTG-TTTGTTTGAA 1298
|||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||
Sbjct 1231 GTTTCATTGTCGGAGAGTGGAGATGGAAGTGGTGGTCTTGAGATTGG-GCTTTGTTTGAA 1289
Query 1299 GAAAGATGATGTGGAACGTTTTGGTTCATTATTCTCCATCGGG--TTGGAATAA 1350
||||||||| |||||||||||| |||| ||||| || ||||| ||| |||||
Sbjct 1290 GAAAGATGACGTGGAACGTTTTAGTTCGTTATTTTC--TCGGGGGTTGAAATAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50512865025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5