BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29636.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936780 jgi|Araly1|936780|scaffold_500971.1                        285    2e-76


> Ahg936780 jgi|Araly1|936780|scaffold_500971.1
Length=1441

 Score =  285 bits (154),  Expect = 2e-76
 Identities = 211/239 (88%), Gaps = 2/239 (1%)
 Strand=Plus/Plus

Query  1    ATGGAATCAATGTGCTACTTCT-TGTATGAAAAAGATGGCAAGAGAACCCTAAAGCCGCC  59
            ||| ||||||| || |||||||  | ||||||||||||||||||||||||||| ||||||
Sbjct  681  ATGCAATCAATATGGTACTTCTCCG-ATGAAAAAGATGGCAAGAGAACCCTAAGGCCGCC  739

Query  60   TCCAAGGGGGGATATCAGCACCGATCTTGTCCGAATCACACTCCAGCTGACTCAGGAGAA  119
            |||||  ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct  740  TCCAACAGGGCATATCAGTACCGATCTTGTTCGGATCACACTCCAGCTGACTCAGGAGAA  799

Query  120  AGTCAAGAAACTTAAGGAGCGAGCCAAGCAAGAATCAGCGCGCTCTCTACATGATCTATA  179
            ||||||||| |||||||||| |||||||| ||| ||||| |||||||| |||||||| ||
Sbjct  800  AGTCAAGAACCTTAAGGAGCAAGCCAAGCGAGAGTCAGCTCGCTCTCTTCATGATCTTTA  859

Query  180  TTTCTCAACGTTCGTCGTCACAATGGCCTATCTCTGGAGCTGTCTGGTGAAGGCGCGCG  238
            ||| ||||| |||||||||||||  || |||||||||||||| ||||| ||| ||||||
Sbjct  860  TTTGTCAACATTCGTCGTCACAACCGCTTATCTCTGGAGCTGCCTGGTAAAGACGCGCG  918


 Score =  178 bits (96),  Expect = 4e-44
 Identities = 137/155 (88%), Gaps = 10/155 (6%)
 Strand=Plus/Plus

Query  238   GAGAGGTACTTTGGGAACTGGGTGTTCCCTATT-G--G---T---TACAAAGCAAAGCTA  288
             |||||||||||||||||||| |||||||||||| |  |   |   ||||||||||||| |
Sbjct  993   GAGAGGTACTTTGGGAACTGTGTGTTCCCTATTGGTTGCTTTGGATACAAAGCAAAGCCA  1052

Query  289   TTGTCGGGAAGAGACGGTTTCTTAAACGCTATCGAGATTCTTGGAGATTCAGTCAAAAGT  348
             || | |||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct  1053  TTTTTGGGAAGAGACGGTTTCATCAACGCTATCGAGATTCTTGGAGACTCAGTCAAAAGT  1112

Query  349   TTGGGTTCACAAGGAATTGAAGCACTT-GCGAGTT  382
             ||||||||||||||||||||| ||||| |||||||
Sbjct  1113  TTGGGTTCACAAGGAATTGAAACACTTTGCGAGTT  1147


 Score =  178 bits (96),  Expect = 4e-44
 Identities = 114/123 (93%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  383   ATTTTGGGTGGGTTAAACCCGTAAACGACGAGATTGTGTCCATTGACCGGTATGCAGCGT  442
             |||| || |||| ||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct  1234  ATTTCGGATGGGGTAAACCCGTAAACCATGAGATTGTGTCCATTGACCGGTATGCAGCGT  1293

Query  443   TCACGATATCAGAGAGGAGGGATGAGATCGGTGGCGCTGAGATAGGCTTGTGTTTGAAGA  502
             |||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct  1294  TCACGATATCGGAGAGGAGGGATGAGATAGGTGGCGCTGAGATCGGTTTGTGTTTGAAGA  1353

Query  503   AGA  505
             |||
Sbjct  1354  AGA  1356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5