BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29760.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896971 jgi|Araly1|896971|Al_scaffold_0005_937 1051 0.0
> Ahg896971 jgi|Araly1|896971|Al_scaffold_0005_937
Length=1140
Score = 1051 bits (569), Expect = 0.0
Identities = 743/824 (90%), Gaps = 23/824 (3%)
Strand=Plus/Plus
Query 790 GAAAAGAATGAAGAAGGTTCGGTTATATCGGCTGTTATGAGTAGTGATGAAGTTTCAGTG 849
||||||||| |||||| ||| |||||||||| || || ||| |||||||||||| | |||
Sbjct 319 GAAAAGAATAAAGAAGCTTCTGTTATATCGGGTGGTACGAGAAGTGATGAAGTTCCCGTG 378
Query 850 GTAGAGAACAACGATTCTTGTGTTGTTTTTG-GTGGAATC--A-GC--G-G-GG-T-AAA 899
|||| |||||||||||||||||||| |||| |||||||| | || | | || | |||
Sbjct 379 GTAGTGAACAACGATTCTTGTGTTG-CTTTGAGTGGAATCAGAGGCGAGAGCGGATCAAA 437
Query 900 TTCATTGGTGTTAAGGAAAAAACTTCTTGTTCTTGATCTTAATGGGTTGCTTGCTGATAT 959
||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TTCATCGGTCTTAAAGAAAAAACTTCTTGTTCTTGATCTTAATGGGTTGCTTGCTGATAT 497
Query 960 AGTTACTCCTCTCAAGGATGTTCCAGCGGATATTAATATTGGAAGAAGAGCAATTTTCAA 1019
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 498 AGTTACTCCTCTAAAAGATGTTCCAGCGGACATTAATATTGGAAGAAGAGCAATTTTTAA 557
Query 1020 GAGACCTTTTTGTGATGAGTTTTTG-AGATTCTGCTTTGACAAGTTTGAAGTTGGTATCT 1078
|||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 558 GAGACCTTATTGTGATGAGTTTTTGAAG-TTCTGTTTTGACAAGTTTGAAGTTGGTATCT 616
Query 1079 GGTCATCGAGAAAACAGAATAATGTTGTAAGAATCACTGAGTTCTTGCTTGGTGATTTGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GGTCATCGAGAAAACAGAATAATGTTGTAAGAATCACTGAGTTCTTGCTTGGTGATTTGA 676
Query 1139 AGAGTAAGCTGTTGTTTTGTTGGGACATGTCTTATTGTGCTACAACCAGTGTTGGTTCGC 1198
||| ||| || |||||||| |||||||||||||||||||||||||| | ||||||||| |
Sbjct 677 AGAATAAACTTTTGTTTTGCTGGGACATGTCTTATTGTGCTACAACGACTGTTGGTTCCC 736
Query 1199 TTGAAAATAGGTACAAATATGTGGTGTTCAAGGATCTAAACCGGCTTTGGGAGAAACACG 1258
||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 737 TTGAAAATATGCACAAATATGTGGTGTTCAAGGATCTAAACCGGCTCTGGGAGAAACATG 796
Query 1259 ATCCAAGACTTCCTTGGAAAATGGGTGATTACAACGAAACCAACACGGTTTTGCTAGACG 1318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 797 ACCCAAGACTTCCTTGGAAAATGGGTGATTACAACGAAACCAACACGGTTTTGCTTGATG 856
Query 1319 ATTCTCCTTACAAGGCTTTGCTTAACCCGC-A-ATA------T-T-CCCTCATTCATACA 1368
|||||||||||||||||||||||||||||| | ||| | | ||||||||||||||
Sbjct 857 ATTCTCCTTACAAGGCTTTGCTTAACCCGCCATATACAGCAATATTCCCTCATTCATACA 916
Query 1369 ATCATCAGAACAAGACAGATACATCTTTAGGTAATGGTGGTGATTTGAGACTTCATCTTG 1428
| ||||||||||| || || ||||| |||||||||||||||||| ||||||||||||| |
Sbjct 917 ACCATCAGAACAAAACTGACACATCCTTAGGTAATGGTGGTGATCTGAGACTTCATCTAG 976
Query 1429 AGAAGTTGGTAGAAGCGGAAAACGTTCAAGATTTCATCAAGAAAAACCCTTTCGGGCAAG 1488
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 977 AGAAGTTGGTAGAAGCTGAAAACGTTCAAGATTTCATCAAGAACAACCCTTTCGGGCAAG 1036
Query 1489 AAGCTATTACGGAAGTAAGCGAATCGTGGGAGTTTTACAGAGAGATCATTCGTATGCTAC 1548
|||||||||||| | ||| ||||| ||||||| |||||||||| ||||||||||||||
Sbjct 1037 AAGCTATTACGGTTGCAAGTGAATCTTGGGAGTATTACAGAGAGGCCATTCGTATGCTAC 1096
Query 1549 GTATATCTTCTCAAACGTACAGATTAAGGAACATCATACGGTAG 1592
||||||| ||| || ||||||||||| ||| |||||||||||
Sbjct 1097 ACATATCTTTTCAGACATACAGATTAAGAAACTTCATACGGTAG 1140
Score = 207 bits (112), Expect = 2e-52
Identities = 154/175 (88%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGCAATTGAACATTCTGTTGAAGAGGAACCTCTGATTAAGAAAGCTAAATTGATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGAGAGCAATTGAACATTCTGTTGAAGAGGAACCTCTGATTAAGAAAGCTAGAGTGATT 60
Query 61 GATAAGGTCGAAAATTGTCACGAGGTTTCAATGTTGCCGCTAAACGAAACCGTGGTTAAA 120
|||||||| || |||||| ||||| || |||||||| ||||||||||||| | |||| |
Sbjct 61 GATAAGGTAGAGAATTGTTACGAGCTTCCAATGTTGTCGCTAAACGAAACAGCGGTTGAT 120
Query 121 GGGAATGAAGAAGTTTGTTTGTTAGATATGGAAGATAAGAAAGAGACTTGTGTTG 175
||||||||| |||||| |||||||||| | ||||| |||| |||||| |||||
Sbjct 121 GGGAATGAACAAGTTTCTTTGTTAGATGTTGAAGAGAAGACTGAGACTCCTGTTG 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5